Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 AL512605.1-202ENST00000441919 381 ntBASIC6.29□□□□□ -1.4
EBF3Q9H4W6 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
EBF3Q9H4W6 AL359955.2-201ENST00000445380 353 ntBASIC6.29□□□□□ -1.4
EBF3Q9H4W6 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC6.29□□□□□ -1.4
EBF3Q9H4W6 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC6.29□□□□□ -1.4
EBF3Q9H4W6 HMGN1P36-201ENST00000446623 298 ntBASIC6.29□□□□□ -1.4
EBF3Q9H4W6 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC6.29□□□□□ -1.4
EBF3Q9H4W6 TAAR4P-201ENST00000454843 1039 ntBASIC6.29□□□□□ -1.4
EBF3Q9H4W6 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC6.29□□□□□ -1.4
EBF3Q9H4W6 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC6.29□□□□□ -1.4
EBF3Q9H4W6 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC6.29□□□□□ -1.4
EBF3Q9H4W6 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC6.29□□□□□ -1.4
EBF3Q9H4W6 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC6.29□□□□□ -1.4
EBF3Q9H4W6 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC6.29□□□□□ -1.4
EBF3Q9H4W6 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
EBF3Q9H4W6 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC6.29□□□□□ -1.4
EBF3Q9H4W6 AC015689.2-201ENST00000528172 1738 ntBASIC6.29□□□□□ -1.4
EBF3Q9H4W6 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC6.29□□□□□ -1.4
EBF3Q9H4W6 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC6.29□□□□□ -1.4
EBF3Q9H4W6 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC6.29□□□□□ -1.4
EBF3Q9H4W6 CLIC4P2-201ENST00000601934 717 ntBASIC6.29□□□□□ -1.4
EBF3Q9H4W6 AC011458.1-201ENST00000604034 617 ntBASIC6.29□□□□□ -1.4
EBF3Q9H4W6 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC6.29□□□□□ -1.4
EBF3Q9H4W6 MIR6768-201ENST00000610734 72 ntBASIC6.29□□□□□ -1.4
EBF3Q9H4W6 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC6.29□□□□□ -1.4
EBF3Q9H4W6 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC6.29□□□□□ -1.4
EBF3Q9H4W6 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
EBF3Q9H4W6 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
EBF3Q9H4W6 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
EBF3Q9H4W6 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
EBF3Q9H4W6 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC6.29□□□□□ -1.4
EBF3Q9H4W6 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
EBF3Q9H4W6 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC6.29□□□□□ -1.4
EBF3Q9H4W6 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 RNA5SP375-201ENST00000362975 119 ntBASIC6.28□□□□□ -1.4
EBF3Q9H4W6 PPCS-201ENST00000372556 984 ntTSL 2 BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 CASKP1-201ENST00000412870 582 ntBASIC6.28□□□□□ -1.4
EBF3Q9H4W6 AC245060.4-201ENST00000413293 1121 ntBASIC6.28□□□□□ -1.4
EBF3Q9H4W6 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 AL445466.1-201ENST00000448432 357 ntBASIC6.28□□□□□ -1.4
EBF3Q9H4W6 snoU13.29-201ENST00000459370 104 ntBASIC6.28□□□□□ -1.4
EBF3Q9H4W6 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 AC112191.2-201ENST00000522428 333 ntBASIC6.28□□□□□ -1.4
EBF3Q9H4W6 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 AC079600.1-201ENST00000550326 297 ntBASIC6.28□□□□□ -1.4
EBF3Q9H4W6 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 ZNF322P1-201ENST00000568013 1209 ntBASIC6.28□□□□□ -1.4
EBF3Q9H4W6 AC020978.7-201ENST00000575953 1187 ntBASIC6.28□□□□□ -1.4
EBF3Q9H4W6 MIR4776-2-201ENST00000580204 80 ntBASIC6.28□□□□□ -1.4
EBF3Q9H4W6 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC6.28□□□□□ -1.4
EBF3Q9H4W6 AC016911.1-201ENST00000613297 452 ntBASIC6.28□□□□□ -1.4
EBF3Q9H4W6 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 AP001153.1-201ENST00000641024 338 ntBASIC6.28□□□□□ -1.4
EBF3Q9H4W6 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 AC140134.1-201ENST00000511830 3544 ntBASIC6.28□□□□□ -1.4
EBF3Q9H4W6 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 AP001541.1-201ENST00000623322 1904 ntBASIC6.28□□□□□ -1.4
EBF3Q9H4W6 WDR95P-201ENST00000425638 1542 ntBASIC6.28□□□□□ -1.4
EBF3Q9H4W6 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
EBF3Q9H4W6 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC6.27□□□□□ -1.41
EBF3Q9H4W6 AL355834.1-201ENST00000556602 3965 ntBASIC6.27□□□□□ -1.41
EBF3Q9H4W6 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
EBF3Q9H4W6 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC6.27□□□□□ -1.41
EBF3Q9H4W6 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
EBF3Q9H4W6 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
EBF3Q9H4W6 MTND5P12-201ENST00000502851 1449 ntBASIC6.27□□□□□ -1.41
EBF3Q9H4W6 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.41
EBF3Q9H4W6 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
EBF3Q9H4W6 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
EBF3Q9H4W6 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
EBF3Q9H4W6 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
EBF3Q9H4W6 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.41
EBF3Q9H4W6 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms