Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 SNX18P25-201ENST00000510539 758 ntBASIC6.53□□□□□ -1.36
COPB1P53618 ZNF519P4-201ENST00000514008 125 ntBASIC6.53□□□□□ -1.36
COPB1P53618 AC136777.2-201ENST00000522979 358 ntBASIC6.53□□□□□ -1.36
COPB1P53618 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COPB1P53618 AC126615.2-201ENST00000553003 515 ntBASIC6.53□□□□□ -1.36
COPB1P53618 AC135626.1-201ENST00000556983 435 ntBASIC6.53□□□□□ -1.36
COPB1P53618 AC090826.1-203ENST00000569235 490 ntBASIC6.53□□□□□ -1.36
COPB1P53618 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC6.53□□□□□ -1.36
COPB1P53618 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC6.53□□□□□ -1.36
COPB1P53618 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC6.53□□□□□ -1.36
COPB1P53618 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COPB1P53618 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC6.53□□□□□ -1.36
COPB1P53618 NDUFB9P1-201ENST00000604683 510 ntBASIC6.53□□□□□ -1.36
COPB1P53618 AL645933.2-201ENST00000606743 1207 ntBASIC6.53□□□□□ -1.36
COPB1P53618 RFPL4AP6-201ENST00000616792 846 ntBASIC6.53□□□□□ -1.36
COPB1P53618 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
COPB1P53618 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC6.53□□□□□ -1.36
COPB1P53618 AL355480.1-201ENST00000629041 99 ntBASIC6.53□□□□□ -1.36
COPB1P53618 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC6.53□□□□□ -1.36
COPB1P53618 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC6.53□□□□□ -1.36
COPB1P53618 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
COPB1P53618 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COPB1P53618 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC6.52□□□□□ -1.36
COPB1P53618 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC6.52□□□□□ -1.36
COPB1P53618 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.36
COPB1P53618 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC6.52□□□□□ -1.36
COPB1P53618 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC6.52□□□□□ -1.36
COPB1P53618 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.36
COPB1P53618 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COPB1P53618 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC6.52□□□□□ -1.37
COPB1P53618 FGG-201ENST00000336098 1659 ntTSL 2 BASIC6.52□□□□□ -1.37
COPB1P53618 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
COPB1P53618 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COPB1P53618 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
COPB1P53618 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COPB1P53618 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COPB1P53618 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COPB1P53618 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
COPB1P53618 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC6.52□□□□□ -1.37
COPB1P53618 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC6.52□□□□□ -1.37
COPB1P53618 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC6.52□□□□□ -1.37
COPB1P53618 SNORA21-201ENST00000362423 132 ntBASIC6.52□□□□□ -1.37
COPB1P53618 AL132875.1-201ENST00000403623 949 ntBASIC6.52□□□□□ -1.37
COPB1P53618 ZFAND6P1-201ENST00000434138 605 ntBASIC6.52□□□□□ -1.37
COPB1P53618 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
COPB1P53618 TIMM8BP2-201ENST00000445940 251 ntBASIC6.52□□□□□ -1.37
COPB1P53618 SEPHS1P4-201ENST00000446112 1176 ntBASIC6.52□□□□□ -1.37
COPB1P53618 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC6.52□□□□□ -1.37
COPB1P53618 AC097359.1-201ENST00000447946 463 ntBASIC6.52□□□□□ -1.37
COPB1P53618 RPL12P39-201ENST00000455456 496 ntBASIC6.52□□□□□ -1.37
COPB1P53618 HMGN1P8-201ENST00000463578 288 ntBASIC6.52□□□□□ -1.37
COPB1P53618 PFN1P6-201ENST00000476786 399 ntBASIC6.52□□□□□ -1.37
COPB1P53618 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC6.52□□□□□ -1.37
COPB1P53618 RPL12P30-201ENST00000488389 499 ntBASIC6.52□□□□□ -1.37
COPB1P53618 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC6.52□□□□□ -1.37
COPB1P53618 RN7SL284P-201ENST00000498823 275 ntBASIC6.52□□□□□ -1.37
COPB1P53618 HMGN1P16-201ENST00000508308 283 ntBASIC6.52□□□□□ -1.37
COPB1P53618 B4GALNT2P1-201ENST00000508857 307 ntBASIC6.52□□□□□ -1.37
COPB1P53618 AC106806.2-201ENST00000509365 500 ntBASIC6.52□□□□□ -1.37
COPB1P53618 APOBEC3AP1-201ENST00000511396 287 ntBASIC6.52□□□□□ -1.37
COPB1P53618 CR383658.1-201ENST00000514609 734 ntBASIC6.52□□□□□ -1.37
COPB1P53618 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC6.52□□□□□ -1.37
COPB1P53618 AP001000.1-201ENST00000526843 742 ntBASIC6.52□□□□□ -1.37
COPB1P53618 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC6.52□□□□□ -1.37
COPB1P53618 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC6.52□□□□□ -1.37
COPB1P53618 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC6.52□□□□□ -1.37
COPB1P53618 CR383656.14-201ENST00000551951 406 ntBASIC6.52□□□□□ -1.37
COPB1P53618 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC6.52□□□□□ -1.37
COPB1P53618 AC004232.2-201ENST00000574245 821 ntBASIC6.52□□□□□ -1.37
COPB1P53618 MIR4310-201ENST00000582950 57 ntBASIC6.52□□□□□ -1.37
COPB1P53618 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC6.52□□□□□ -1.37
COPB1P53618 AC011891.2-201ENST00000604949 397 ntBASIC6.52□□□□□ -1.37
COPB1P53618 AC005828.7-201ENST00000607331 556 ntBASIC6.52□□□□□ -1.37
COPB1P53618 AL080312.2-201ENST00000613001 630 ntBASIC6.52□□□□□ -1.37
COPB1P53618 WBP1LP8-201ENST00000617401 327 ntBASIC6.52□□□□□ -1.37
COPB1P53618 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC6.52□□□□□ -1.37
COPB1P53618 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC6.52□□□□□ -1.37
COPB1P53618 UGP2-232ENST00000640075 567 ntTSL 5 BASIC6.52□□□□□ -1.37
COPB1P53618 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COPB1P53618 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC6.52□□□□□ -1.37
COPB1P53618 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
COPB1P53618 PPBPP2-201ENST00000513150 1362 ntBASIC6.52□□□□□ -1.37
COPB1P53618 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
COPB1P53618 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
COPB1P53618 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
COPB1P53618 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
COPB1P53618 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC6.52□□□□□ -1.37
COPB1P53618 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COPB1P53618 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC6.52□□□□□ -1.37
COPB1P53618 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
COPB1P53618 TET1P1-201ENST00000426627 2301 ntBASIC6.51□□□□□ -1.37
COPB1P53618 AP002512.4-202ENST00000641599 4530 ntBASIC6.51□□□□□ -1.37
COPB1P53618 ING3-204ENST00000431467 1447 ntTSL 2 BASIC6.51□□□□□ -1.37
COPB1P53618 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC6.51□□□□□ -1.37
COPB1P53618 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC6.51□□□□□ -1.37
COPB1P53618 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COPB1P53618 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COPB1P53618 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COPB1P53618 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
COPB1P53618 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms