Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 HMGB1P51-201ENST00000605166 638 ntBASIC7.75□□□□□ -1.17
LIG1P18858 PTCHD3P1-201ENST00000612350 537 ntBASIC7.75□□□□□ -1.17
LIG1P18858 AL445647.2-201ENST00000615170 130 ntBASIC7.75□□□□□ -1.17
LIG1P18858 AC084035.1-201ENST00000634543 607 ntBASIC7.75□□□□□ -1.17
LIG1P18858 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC7.75□□□□□ -1.17
LIG1P18858 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
LIG1P18858 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC7.75□□□□□ -1.17
LIG1P18858 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC7.75□□□□□ -1.17
LIG1P18858 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC7.75□□□□□ -1.17
LIG1P18858 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC7.74□□□□□ -1.17
LIG1P18858 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
LIG1P18858 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC7.74□□□□□ -1.17
LIG1P18858 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC7.74□□□□□ -1.17
LIG1P18858 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC7.74□□□□□ -1.17
LIG1P18858 LRRC37A12P-201ENST00000454917 1801 ntBASIC7.74□□□□□ -1.17
LIG1P18858 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
LIG1P18858 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
LIG1P18858 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC7.74□□□□□ -1.17
LIG1P18858 OR4K1-201ENST00000285600 1076 ntAPPRIS P1 BASIC7.74□□□□□ -1.17
LIG1P18858 MT1A-201ENST00000290705 396 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
LIG1P18858 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC7.74□□□□□ -1.17
LIG1P18858 SULT1C3-201ENST00000329106 915 ntAPPRIS P1 TSL 2 BASIC7.74□□□□□ -1.17
LIG1P18858 ZNF37CP-201ENST00000406795 241 ntBASIC7.74□□□□□ -1.17
LIG1P18858 AC104823.1-201ENST00000413290 989 ntTSL 2 BASIC7.74□□□□□ -1.17
LIG1P18858 AC096537.2-201ENST00000413707 714 ntBASIC7.74□□□□□ -1.17
LIG1P18858 AC019130.1-201ENST00000413841 391 ntTSL 2 BASIC7.74□□□□□ -1.17
LIG1P18858 AL449283.1-202ENST00000418249 604 ntBASIC7.74□□□□□ -1.17
LIG1P18858 AL158212.1-201ENST00000428766 315 ntTSL 5 BASIC7.74□□□□□ -1.17
LIG1P18858 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC7.74□□□□□ -1.17
LIG1P18858 AC007179.2-206ENST00000434611 467 ntTSL 3 BASIC7.74□□□□□ -1.17
LIG1P18858 NPM1P33-201ENST00000438918 872 ntBASIC7.74□□□□□ -1.17
LIG1P18858 AC009518.3-201ENST00000438972 253 ntBASIC7.74□□□□□ -1.17
LIG1P18858 ZNF138-205ENST00000440155 1066 ntAPPRIS P3 TSL 2 BASIC7.74□□□□□ -1.17
LIG1P18858 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC7.74□□□□□ -1.17
LIG1P18858 BX005266.3-201ENST00000443013 1075 ntBASIC7.74□□□□□ -1.17
LIG1P18858 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC7.74□□□□□ -1.17
LIG1P18858 BMI1P1-201ENST00000445879 941 ntBASIC7.74□□□□□ -1.17
LIG1P18858 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
LIG1P18858 MTND2P19-201ENST00000449129 1012 ntBASIC7.74□□□□□ -1.17
LIG1P18858 AC009948.1-203ENST00000450044 793 ntTSL 3 BASIC7.74□□□□□ -1.17
LIG1P18858 AC006026.3-201ENST00000454029 143 ntTSL 3 BASIC7.74□□□□□ -1.17
LIG1P18858 AL450345.1-201ENST00000456118 311 ntTSL 3 BASIC7.74□□□□□ -1.17
LIG1P18858 MTCO2P18-201ENST00000457151 658 ntBASIC7.74□□□□□ -1.17
LIG1P18858 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC7.74□□□□□ -1.17
LIG1P18858 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC7.74□□□□□ -1.17
LIG1P18858 TRBV8-1-201ENST00000481590 279 ntBASIC7.74□□□□□ -1.17
LIG1P18858 AL079303.1-201ENST00000486611 463 ntBASIC7.74□□□□□ -1.17
LIG1P18858 AC117395.1-201ENST00000487390 403 ntBASIC7.74□□□□□ -1.17
LIG1P18858 PFN2-213ENST00000494827 793 ntTSL 4 BASIC7.74□□□□□ -1.17
LIG1P18858 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC7.74□□□□□ -1.17
LIG1P18858 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC7.74□□□□□ -1.17
LIG1P18858 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC7.74□□□□□ -1.17
LIG1P18858 KCNU1-202ENST00000518904 334 ntTSL 2 BASIC7.74□□□□□ -1.17
LIG1P18858 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC7.74□□□□□ -1.17
LIG1P18858 CASC11-203ENST00000519071 791 ntTSL 3 BASIC7.74□□□□□ -1.17
LIG1P18858 HMGB1P1-201ENST00000522557 636 ntBASIC7.74□□□□□ -1.17
LIG1P18858 AC013549.3-201ENST00000528792 419 ntTSL 3 BASIC7.74□□□□□ -1.17
LIG1P18858 AC156455.1-201ENST00000538790 851 ntTSL 2 BASIC7.74□□□□□ -1.17
LIG1P18858 AC022509.1-203ENST00000541940 708 ntTSL 4 BASIC7.74□□□□□ -1.17
LIG1P18858 AC092865.1-201ENST00000544395 1023 ntBASIC7.74□□□□□ -1.17
LIG1P18858 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC7.74□□□□□ -1.17
LIG1P18858 NOP56P3-201ENST00000549457 385 ntBASIC7.74□□□□□ -1.17
LIG1P18858 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC7.74□□□□□ -1.17
LIG1P18858 AL358292.1-201ENST00000554181 412 ntTSL 2 BASIC7.74□□□□□ -1.17
LIG1P18858 AC020914.7-201ENST00000594477 545 ntBASIC7.74□□□□□ -1.17
LIG1P18858 NTAN1P1-201ENST00000603150 646 ntBASIC7.74□□□□□ -1.17
LIG1P18858 AL583832.1-201ENST00000603227 784 ntBASIC7.74□□□□□ -1.17
LIG1P18858 AC079610.2-201ENST00000604818 690 ntBASIC7.74□□□□□ -1.17
LIG1P18858 AC245407.2-201ENST00000614199 451 ntBASIC7.74□□□□□ -1.17
LIG1P18858 AL133243.1-201ENST00000614487 366 ntBASIC7.74□□□□□ -1.17
LIG1P18858 AC090246.1-201ENST00000616499 426 ntBASIC7.74□□□□□ -1.17
LIG1P18858 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC7.74□□□□□ -1.17
LIG1P18858 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
LIG1P18858 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
LIG1P18858 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
LIG1P18858 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC7.74□□□□□ -1.17
LIG1P18858 HSPD1P1-201ENST00000503199 1726 ntBASIC7.74□□□□□ -1.17
LIG1P18858 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
LIG1P18858 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
LIG1P18858 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC7.74□□□□□ -1.17
LIG1P18858 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC7.74□□□□□ -1.17
LIG1P18858 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC7.73□□□□□ -1.17
LIG1P18858 AC025809.2-201ENST00000625085 1802 ntBASIC7.73□□□□□ -1.17
LIG1P18858 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC7.73□□□□□ -1.17
LIG1P18858 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC7.73□□□□□ -1.17
LIG1P18858 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
LIG1P18858 SRBD1-201ENST00000263736 3681 ntAPPRIS P1 TSL 2 BASIC7.73□□□□□ -1.17
LIG1P18858 AC010401.2-201ENST00000575137 4934 ntBASIC7.73□□□□□ -1.17
LIG1P18858 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC7.73□□□□□ -1.17
LIG1P18858 AC011815.2-201ENST00000618230 2021 ntBASIC7.73□□□□□ -1.17
LIG1P18858 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC7.73□□□□□ -1.17
LIG1P18858 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
LIG1P18858 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
LIG1P18858 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
LIG1P18858 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
LIG1P18858 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC7.73□□□□□ -1.17
LIG1P18858 RNA5SP333-201ENST00000363466 118 ntBASIC7.73□□□□□ -1.17
LIG1P18858 RNA5SP334-201ENST00000364825 118 ntBASIC7.73□□□□□ -1.17
LIG1P18858 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
LIG1P18858 RNU6-636P-201ENST00000384598 107 ntBASIC7.73□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms