Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SLC28A1O00337 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.66□□□□□ -1.5
SLC28A1O00337 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
SLC28A1O00337 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SLC28A1O00337 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
SLC28A1O00337 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.66□□□□□ -1.5
SLC28A1O00337 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
SLC28A1O00337 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.66□□□□□ -1.5
SLC28A1O00337 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.66□□□□□ -1.5
SLC28A1O00337 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SLC28A1O00337 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.66□□□□□ -1.5
SLC28A1O00337 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
SLC28A1O00337 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SLC28A1O00337 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
SLC28A1O00337 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.65□□□□□ -1.5
SLC28A1O00337 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SLC28A1O00337 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
SLC28A1O00337 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.65□□□□□ -1.5
SLC28A1O00337 AC004076.2-201ENST00000620532 3323 ntBASIC5.65□□□□□ -1.5
SLC28A1O00337 CA1-225ENST00000626824 2405 ntTSL 5 BASIC5.65□□□□□ -1.5
SLC28A1O00337 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SLC28A1O00337 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SLC28A1O00337 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC5.65□□□□□ -1.5
SLC28A1O00337 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SLC28A1O00337 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.65□□□□□ -1.5
SLC28A1O00337 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
SLC28A1O00337 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SLC28A1O00337 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SLC28A1O00337 CBX1P3-201ENST00000413296 527 ntBASIC5.65□□□□□ -1.5
SLC28A1O00337 AL035422.1-201ENST00000414193 397 ntBASIC5.65□□□□□ -1.5
SLC28A1O00337 Z82198.3-201ENST00000421145 199 ntBASIC5.65□□□□□ -1.5
SLC28A1O00337 VN1R21P-201ENST00000426703 765 ntBASIC5.65□□□□□ -1.5
SLC28A1O00337 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.65□□□□□ -1.5
SLC28A1O00337 AC023141.3-201ENST00000436698 278 ntBASIC5.65□□□□□ -1.5
SLC28A1O00337 RPS12P17-201ENST00000438591 377 ntBASIC5.65□□□□□ -1.5
SLC28A1O00337 AC023141.8-201ENST00000442554 208 ntBASIC5.65□□□□□ -1.5
SLC28A1O00337 CEACAMP11-201ENST00000455211 583 ntBASIC5.65□□□□□ -1.5
SLC28A1O00337 RN7SL362P-201ENST00000494228 267 ntBASIC5.65□□□□□ -1.5
SLC28A1O00337 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SLC28A1O00337 AC113367.2-201ENST00000505749 160 ntBASIC5.65□□□□□ -1.5
SLC28A1O00337 GUSBP9-201ENST00000510138 584 ntBASIC5.65□□□□□ -1.5
SLC28A1O00337 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC5.65□□□□□ -1.5
SLC28A1O00337 Vault.2-201ENST00000516519 98 ntBASIC5.65□□□□□ -1.5
SLC28A1O00337 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.65□□□□□ -1.5
SLC28A1O00337 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC5.65□□□□□ -1.5
SLC28A1O00337 OR8Q1P-201ENST00000526467 655 ntBASIC5.65□□□□□ -1.5
SLC28A1O00337 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SLC28A1O00337 AC084824.2-201ENST00000548906 345 ntBASIC5.65□□□□□ -1.5
SLC28A1O00337 NPM1P5-201ENST00000557228 838 ntBASIC5.65□□□□□ -1.5
SLC28A1O00337 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.65□□□□□ -1.5
SLC28A1O00337 AC004232.2-201ENST00000574245 821 ntBASIC5.65□□□□□ -1.5
SLC28A1O00337 TXNP4-201ENST00000575018 310 ntBASIC5.65□□□□□ -1.5
SLC28A1O00337 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.65□□□□□ -1.5
SLC28A1O00337 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SLC28A1O00337 NANOGP3-201ENST00000605855 286 ntBASIC5.65□□□□□ -1.5
SLC28A1O00337 AC244196.4-201ENST00000611787 392 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
SLC28A1O00337 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC5.65□□□□□ -1.5
SLC28A1O00337 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.65□□□□□ -1.5
SLC28A1O00337 AC073488.6-201ENST00000632293 754 ntBASIC5.65□□□□□ -1.5
SLC28A1O00337 AL357140.4-201ENST00000636827 412 ntBASIC5.65□□□□□ -1.5
SLC28A1O00337 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SLC28A1O00337 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
SLC28A1O00337 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.65□□□□□ -1.51
SLC28A1O00337 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SLC28A1O00337 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.65□□□□□ -1.51
SLC28A1O00337 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
SLC28A1O00337 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.65□□□□□ -1.51
SLC28A1O00337 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SLC28A1O00337 AC027279.4-201ENST00000624371 2072 ntBASIC5.65□□□□□ -1.51
SLC28A1O00337 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
SLC28A1O00337 AL355834.1-201ENST00000556602 3965 ntBASIC5.65□□□□□ -1.51
SLC28A1O00337 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.65□□□□□ -1.51
SLC28A1O00337 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.64□□□□□ -1.51
SLC28A1O00337 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SLC28A1O00337 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SLC28A1O00337 AC009962.1-201ENST00000567327 3813 ntBASIC5.64□□□□□ -1.51
SLC28A1O00337 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SLC28A1O00337 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
SLC28A1O00337 AC093671.1-201ENST00000624981 2929 ntBASIC5.64□□□□□ -1.51
SLC28A1O00337 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
SLC28A1O00337 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SLC28A1O00337 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
SLC28A1O00337 SELENOWP1-201ENST00000322792 252 ntBASIC5.64□□□□□ -1.51
SLC28A1O00337 RN7SKP78-201ENST00000364711 318 ntBASIC5.64□□□□□ -1.51
SLC28A1O00337 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
SLC28A1O00337 U3.23-201ENST00000391132 200 ntBASIC5.64□□□□□ -1.51
SLC28A1O00337 RPL35AP3-201ENST00000414680 288 ntBASIC5.64□□□□□ -1.51
SLC28A1O00337 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC5.64□□□□□ -1.51
SLC28A1O00337 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC5.64□□□□□ -1.51
SLC28A1O00337 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC5.64□□□□□ -1.51
SLC28A1O00337 BX119904.3-201ENST00000428194 957 ntBASIC5.64□□□□□ -1.51
SLC28A1O00337 AC108479.1-201ENST00000431142 427 ntBASIC5.64□□□□□ -1.51
SLC28A1O00337 FTO-202ENST00000431610 707 ntTSL 3 BASIC5.64□□□□□ -1.51
SLC28A1O00337 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.64□□□□□ -1.51
SLC28A1O00337 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.64□□□□□ -1.51
SLC28A1O00337 HMGB1P7-201ENST00000450921 612 ntBASIC5.64□□□□□ -1.51
SLC28A1O00337 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.64□□□□□ -1.51
SLC28A1O00337 GLRX-203ENST00000505427 632 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
SLC28A1O00337 OR7E99P-201ENST00000505750 922 ntBASIC5.64□□□□□ -1.51
SLC28A1O00337 AC111000.6-201ENST00000514471 709 ntBASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms