Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC6.35□□□□□ -1.39
USP29Q9HBJ7 AC124916.2-201ENST00000604416 224 ntBASIC6.35□□□□□ -1.39
USP29Q9HBJ7 AC015982.1-201ENST00000608113 465 ntBASIC6.35□□□□□ -1.39
USP29Q9HBJ7 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC6.35□□□□□ -1.39
USP29Q9HBJ7 AC026367.3-201ENST00000619032 590 ntBASIC6.35□□□□□ -1.39
USP29Q9HBJ7 AC023510.2-201ENST00000622162 746 ntBASIC6.35□□□□□ -1.39
USP29Q9HBJ7 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC6.35□□□□□ -1.39
USP29Q9HBJ7 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
USP29Q9HBJ7 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
USP29Q9HBJ7 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
USP29Q9HBJ7 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
USP29Q9HBJ7 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
USP29Q9HBJ7 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC6.35□□□□□ -1.39
USP29Q9HBJ7 AC015799.1-201ENST00000622996 3122 ntBASIC6.35□□□□□ -1.39
USP29Q9HBJ7 AC083837.1-201ENST00000565297 2994 ntBASIC6.35□□□□□ -1.39
USP29Q9HBJ7 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
USP29Q9HBJ7 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC6.35□□□□□ -1.39
USP29Q9HBJ7 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
USP29Q9HBJ7 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 ZNF101P1-201ENST00000435701 1720 ntBASIC6.34□□□□□ -1.39
USP29Q9HBJ7 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 RNU1-59P-201ENST00000364829 162 ntBASIC6.34□□□□□ -1.39
USP29Q9HBJ7 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 RNA5SP122-201ENST00000384457 108 ntBASIC6.34□□□□□ -1.39
USP29Q9HBJ7 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 RPS26P38-201ENST00000414476 348 ntBASIC6.34□□□□□ -1.39
USP29Q9HBJ7 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 OSTCP4-201ENST00000424397 449 ntBASIC6.34□□□□□ -1.39
USP29Q9HBJ7 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 AC094019.1-201ENST00000434678 472 ntBASIC6.34□□□□□ -1.39
USP29Q9HBJ7 EIF5AP4-201ENST00000441206 465 ntBASIC6.34□□□□□ -1.39
USP29Q9HBJ7 AL158053.1-201ENST00000441503 453 ntBASIC6.34□□□□□ -1.39
USP29Q9HBJ7 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 RPL12P24-201ENST00000474907 486 ntBASIC6.34□□□□□ -1.39
USP29Q9HBJ7 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 RN7SKP157-201ENST00000516174 282 ntBASIC6.34□□□□□ -1.39
USP29Q9HBJ7 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 AP004609.2-201ENST00000532177 190 ntBASIC6.34□□□□□ -1.39
USP29Q9HBJ7 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 AC092865.1-201ENST00000544395 1023 ntBASIC6.34□□□□□ -1.39
USP29Q9HBJ7 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 DNAJC19P3-201ENST00000594491 331 ntBASIC6.34□□□□□ -1.39
USP29Q9HBJ7 BNIP3P19-201ENST00000605397 577 ntBASIC6.34□□□□□ -1.39
USP29Q9HBJ7 AP001437.1-201ENST00000608783 456 ntBASIC6.34□□□□□ -1.39
USP29Q9HBJ7 AL365181.4-201ENST00000609800 547 ntBASIC6.34□□□□□ -1.39
USP29Q9HBJ7 AC084824.5-201ENST00000612009 413 ntBASIC6.34□□□□□ -1.39
USP29Q9HBJ7 RN7SL261P-201ENST00000613441 282 ntBASIC6.34□□□□□ -1.39
USP29Q9HBJ7 U1.25-201ENST00000614085 162 ntBASIC6.34□□□□□ -1.39
USP29Q9HBJ7 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 U1.34-201ENST00000618578 162 ntBASIC6.34□□□□□ -1.39
USP29Q9HBJ7 U1.31-201ENST00000620022 160 ntBASIC6.34□□□□□ -1.39
USP29Q9HBJ7 AC097372.4-201ENST00000625025 466 ntBASIC6.34□□□□□ -1.39
USP29Q9HBJ7 UBA3-213ENST00000631029 123 ntTSL 5 BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 AC092724.1-201ENST00000624623 3397 ntBASIC6.34□□□□□ -1.39
USP29Q9HBJ7 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC6.34□□□□□ -1.39
USP29Q9HBJ7 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC6.34□□□□□ -1.4
USP29Q9HBJ7 AL592429.1-201ENST00000403909 1473 ntBASIC6.34□□□□□ -1.4
USP29Q9HBJ7 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC6.34□□□□□ -1.4
USP29Q9HBJ7 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC6.34□□□□□ -1.4
USP29Q9HBJ7 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC6.33□□□□□ -1.4
USP29Q9HBJ7 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC6.33□□□□□ -1.4
USP29Q9HBJ7 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC6.33□□□□□ -1.4
USP29Q9HBJ7 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC6.33□□□□□ -1.4
USP29Q9HBJ7 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC6.33□□□□□ -1.4
USP29Q9HBJ7 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
USP29Q9HBJ7 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC6.33□□□□□ -1.4
USP29Q9HBJ7 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC6.33□□□□□ -1.4
USP29Q9HBJ7 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
USP29Q9HBJ7 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC6.33□□□□□ -1.4
USP29Q9HBJ7 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
USP29Q9HBJ7 RNU6-386P-201ENST00000362650 107 ntBASIC6.33□□□□□ -1.4
USP29Q9HBJ7 RNA5SP346-201ENST00000363541 121 ntBASIC6.33□□□□□ -1.4
USP29Q9HBJ7 RPL23AP17-201ENST00000401064 499 ntBASIC6.33□□□□□ -1.4
USP29Q9HBJ7 GCNT1P4-201ENST00000404096 329 ntBASIC6.33□□□□□ -1.4
USP29Q9HBJ7 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC6.33□□□□□ -1.4
USP29Q9HBJ7 EEF1B2P8-201ENST00000414101 671 ntBASIC6.33□□□□□ -1.4
USP29Q9HBJ7 AL035422.1-201ENST00000414193 397 ntBASIC6.33□□□□□ -1.4
USP29Q9HBJ7 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC6.33□□□□□ -1.4
USP29Q9HBJ7 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC6.33□□□□□ -1.4
USP29Q9HBJ7 ZNF736P6Y-201ENST00000447526 1213 ntBASIC6.33□□□□□ -1.4
USP29Q9HBJ7 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC6.33□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms