Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 Metazoa_SRP.195-201ENST00000612667 287 ntBASIC5.71□□□□□ -1.5
CCDC28BQ9BUN5 BNIP3P41-202ENST00000616656 861 ntBASIC5.71□□□□□ -1.5
CCDC28BQ9BUN5 MIR6503-201ENST00000622884 86 ntBASIC5.71□□□□□ -1.5
CCDC28BQ9BUN5 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC28BQ9BUN5 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC5.71□□□□□ -1.5
CCDC28BQ9BUN5 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC28BQ9BUN5 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC28BQ9BUN5 HCFC2P1-201ENST00000392864 1592 ntBASIC5.71□□□□□ -1.5
CCDC28BQ9BUN5 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC28BQ9BUN5 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.71□□□□□ -1.5
CCDC28BQ9BUN5 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC5.71□□□□□ -1.5
CCDC28BQ9BUN5 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC28BQ9BUN5 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC28BQ9BUN5 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC28BQ9BUN5 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 AC018809.2-201ENST00000602436 3823 ntBASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 AC018717.1-201ENST00000457712 1505 ntBASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 AC093849.1-201ENST00000563631 2209 ntBASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 RSPO3-202ENST00000368317 1290 ntTSL 2 BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 AL117344.1-201ENST00000407196 616 ntBASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 AL121781.1-201ENST00000419863 168 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 AC083973.1-201ENST00000523459 590 ntTSL 2 BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 OLR1-210ENST00000544577 924 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 AC007066.2-202ENST00000566531 914 ntBASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 MIR3936-201ENST00000584304 110 ntBASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 AC006272.2-201ENST00000594725 163 ntBASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 AC023206.1-201ENST00000605824 298 ntBASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 AC007100.1-201ENST00000606382 478 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 AC024884.1-201ENST00000620583 399 ntBASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 AL357562.1-201ENST00000624911 609 ntBASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 SYT14P1-202ENST00000600441 1448 ntBASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 MFSD8-239ENST00000641590 2479 ntBASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC28BQ9BUN5 AC104260.2-201ENST00000623551 3497 ntBASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 AL591503.1-201ENST00000366224 477 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 MIR138-2-201ENST00000384916 84 ntBASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 AL139805.1-201ENST00000407837 289 ntBASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 CLCN3P1-201ENST00000423965 1017 ntBASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 OR10T1P-201ENST00000424327 947 ntBASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 AC016582.1-203ENST00000433142 502 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 RPS12P17-201ENST00000438591 377 ntBASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 AC234771.4-201ENST00000441416 730 ntBASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 AL645936.1-201ENST00000441979 518 ntBASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 SEPT14P12-201ENST00000442280 560 ntBASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 RPS18P1-201ENST00000447840 458 ntBASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 AP003385.3-201ENST00000472498 287 ntBASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 RPS7P11-201ENST00000484240 586 ntBASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 TDGP1-201ENST00000543961 1229 ntBASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 AC083964.1-201ENST00000607549 630 ntBASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 FBXL21-201ENST00000297158 1305 ntBASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.69□□□□□ -1.5
CCDC28BQ9BUN5 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC28BQ9BUN5 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 75 ms