Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC5.92□□□□□ -1.46
VPS35Q96QK1 AC099677.3-201ENST00000427081 395 ntBASIC5.92□□□□□ -1.46
VPS35Q96QK1 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.92□□□□□ -1.46
VPS35Q96QK1 CUBNP2-201ENST00000443534 1139 ntBASIC5.92□□□□□ -1.46
VPS35Q96QK1 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
VPS35Q96QK1 AC090589.1-201ENST00000473109 362 ntBASIC5.92□□□□□ -1.46
VPS35Q96QK1 RN7SL193P-201ENST00000491708 276 ntBASIC5.92□□□□□ -1.46
VPS35Q96QK1 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
VPS35Q96QK1 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC5.92□□□□□ -1.46
VPS35Q96QK1 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.92□□□□□ -1.46
VPS35Q96QK1 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC5.92□□□□□ -1.46
VPS35Q96QK1 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC5.92□□□□□ -1.46
VPS35Q96QK1 AC108865.2-201ENST00000606881 432 ntBASIC5.92□□□□□ -1.46
VPS35Q96QK1 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
VPS35Q96QK1 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC5.92□□□□□ -1.46
VPS35Q96QK1 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
VPS35Q96QK1 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
VPS35Q96QK1 AL591135.1-201ENST00000401578 5914 ntBASIC5.92□□□□□ -1.46
VPS35Q96QK1 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
VPS35Q96QK1 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
VPS35Q96QK1 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
VPS35Q96QK1 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
VPS35Q96QK1 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
VPS35Q96QK1 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC5.91□□□□□ -1.46
VPS35Q96QK1 AC015689.2-201ENST00000528172 1738 ntBASIC5.91□□□□□ -1.46
VPS35Q96QK1 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
VPS35Q96QK1 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
VPS35Q96QK1 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
VPS35Q96QK1 SELENOWP1-201ENST00000322792 252 ntBASIC5.91□□□□□ -1.46
VPS35Q96QK1 OR56A4-201ENST00000330728 1209 ntBASIC5.91□□□□□ -1.46
VPS35Q96QK1 RNA5SP477-201ENST00000362639 119 ntBASIC5.91□□□□□ -1.46
VPS35Q96QK1 RNA5-8SP5-201ENST00000365304 152 ntBASIC5.91□□□□□ -1.46
VPS35Q96QK1 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC5.91□□□□□ -1.46
VPS35Q96QK1 SUGT1P2-201ENST00000379452 992 ntBASIC5.91□□□□□ -1.46
VPS35Q96QK1 BX284632.2-201ENST00000421091 399 ntBASIC5.91□□□□□ -1.46
VPS35Q96QK1 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC5.91□□□□□ -1.46
VPS35Q96QK1 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC5.91□□□□□ -1.46
VPS35Q96QK1 AL512605.1-202ENST00000441919 381 ntBASIC5.91□□□□□ -1.46
VPS35Q96QK1 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC5.91□□□□□ -1.46
VPS35Q96QK1 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC5.91□□□□□ -1.46
VPS35Q96QK1 AL359955.2-201ENST00000445380 353 ntBASIC5.91□□□□□ -1.46
VPS35Q96QK1 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC5.91□□□□□ -1.46
VPS35Q96QK1 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC5.91□□□□□ -1.46
VPS35Q96QK1 AL122020.1-201ENST00000472287 459 ntBASIC5.91□□□□□ -1.46
VPS35Q96QK1 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC5.91□□□□□ -1.46
VPS35Q96QK1 AC008629.2-201ENST00000503783 483 ntBASIC5.91□□□□□ -1.46
VPS35Q96QK1 AC060775.1-201ENST00000518241 520 ntBASIC5.91□□□□□ -1.46
VPS35Q96QK1 IGKV1OR22-1-201ENST00000521497 360 ntBASIC5.91□□□□□ -1.46
VPS35Q96QK1 TRIM77BP-201ENST00000524985 1119 ntBASIC5.91□□□□□ -1.46
VPS35Q96QK1 ASB8-203ENST00000535988 679 ntTSL 2 BASIC5.91□□□□□ -1.46
VPS35Q96QK1 AC244502.2-201ENST00000543361 851 ntBASIC5.91□□□□□ -1.46
VPS35Q96QK1 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
VPS35Q96QK1 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.91□□□□□ -1.46
VPS35Q96QK1 AL355974.3-201ENST00000617383 467 ntBASIC5.91□□□□□ -1.46
VPS35Q96QK1 MIR1910-201ENST00000636955 80 ntBASIC5.91□□□□□ -1.46
VPS35Q96QK1 OR56A4-203ENST00000641279 1209 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
VPS35Q96QK1 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
VPS35Q96QK1 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
VPS35Q96QK1 AF287957.1-201ENST00000607368 1595 ntBASIC5.91□□□□□ -1.46
VPS35Q96QK1 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
VPS35Q96QK1 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
VPS35Q96QK1 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
VPS35Q96QK1 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.91□□□□□ -1.46
VPS35Q96QK1 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
VPS35Q96QK1 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
VPS35Q96QK1 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC5.91□□□□□ -1.46
VPS35Q96QK1 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC5.91□□□□□ -1.46
VPS35Q96QK1 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC5.9□□□□□ -1.46
VPS35Q96QK1 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.46
VPS35Q96QK1 AL078595.2-201ENST00000605309 1780 ntBASIC5.9□□□□□ -1.46
VPS35Q96QK1 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.9□□□□□ -1.46
VPS35Q96QK1 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
VPS35Q96QK1 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
VPS35Q96QK1 AC027088.4-201ENST00000611559 1947 ntBASIC5.9□□□□□ -1.46
VPS35Q96QK1 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.46
VPS35Q96QK1 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.46
VPS35Q96QK1 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.46
VPS35Q96QK1 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
VPS35Q96QK1 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
VPS35Q96QK1 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.46
VPS35Q96QK1 RNA5SP273-201ENST00000362484 113 ntBASIC5.9□□□□□ -1.46
VPS35Q96QK1 RAB5CP1-201ENST00000395972 580 ntBASIC5.9□□□□□ -1.46
VPS35Q96QK1 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC5.9□□□□□ -1.46
VPS35Q96QK1 REREP1Y-201ENST00000422655 198 ntBASIC5.9□□□□□ -1.46
VPS35Q96QK1 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC5.9□□□□□ -1.46
VPS35Q96QK1 TRGC2-201ENST00000436911 1013 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
VPS35Q96QK1 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC5.9□□□□□ -1.46
VPS35Q96QK1 REREP2Y-201ENST00000439103 200 ntBASIC5.9□□□□□ -1.46
VPS35Q96QK1 CYCSP51-201ENST00000443545 318 ntBASIC5.9□□□□□ -1.46
VPS35Q96QK1 HMGN1P2-201ENST00000445197 310 ntBASIC5.9□□□□□ -1.46
VPS35Q96QK1 RPL5P10-201ENST00000445207 894 ntBASIC5.9□□□□□ -1.46
VPS35Q96QK1 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC5.9□□□□□ -1.46
VPS35Q96QK1 ACA64.4-201ENST00000459070 127 ntBASIC5.9□□□□□ -1.46
VPS35Q96QK1 SLC25A51P1-201ENST00000468432 871 ntBASIC5.9□□□□□ -1.46
VPS35Q96QK1 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC5.9□□□□□ -1.46
VPS35Q96QK1 NPM1P21-201ENST00000513394 762 ntBASIC5.9□□□□□ -1.46
VPS35Q96QK1 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC5.9□□□□□ -1.46
VPS35Q96QK1 SNORA70.11-201ENST00000515987 138 ntBASIC5.9□□□□□ -1.46
VPS35Q96QK1 SNORA70.13-201ENST00000516116 138 ntBASIC5.9□□□□□ -1.46
VPS35Q96QK1 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC5.9□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms