Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 FAM160A1-203ENST00000505231 4156 ntAPPRIS P1 TSL 5 BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 AL512634.1-201ENST00000566873 2432 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 MFSD4BP1-201ENST00000513330 1552 ntBASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 CASC19-243ENST00000641588 1546 ntBASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 OR5W1P-201ENST00000423705 938 ntBASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 OR51A1P-201ENST00000511110 946 ntBASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 NRBF2P4-201ENST00000520874 850 ntBASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 BMPR1APS2-201ENST00000527904 1012 ntBASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 AC090424.1-201ENST00000535243 736 ntBASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 TACC1-210ENST00000520615 5509 ntTSL 2 BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 DCX-208ENST00000636035 9269 ntAPPRIS ALT1 TSL 2 BASIC7.11□□□□□ -1.27
CCDC88AQ3V6T2 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 AL121768.1-201ENST00000613917 2544 ntBASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 TTC39B-208ENST00000512701 10483 ntAPPRIS P3 TSL 2 BASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 RNA5SP211-201ENST00000365516 117 ntBASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 PRUNEP1-201ENST00000425846 705 ntBASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 VDAC1P6-201ENST00000430062 855 ntBASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 GSTA7P-201ENST00000438425 448 ntBASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 EIF4EBP2P1-201ENST00000450009 343 ntBASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 HIGD1AP8-201ENST00000453927 274 ntBASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 AL445687.2-201ENST00000458156 728 ntBASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 ACA64.4-201ENST00000459070 127 ntBASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 RN7SL591P-201ENST00000496150 292 ntBASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 MIR6837-201ENST00000620884 64 ntBASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 MVP-219ENST00000629059 120 ntTSL 5 BASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 LRRC37A9P-201ENST00000603850 5376 ntBASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 AP003175.1-201ENST00000641383 6658 ntBASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC7.1□□□□□ -1.27
CCDC88AQ3V6T2 GTF2IP4-201ENST00000453092 2054 ntBASIC7.09□□□□□ -1.27
CCDC88AQ3V6T2 SLC7A6-209ENST00000566454 6308 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
CCDC88AQ3V6T2 PKIB-211ENST00000615438 1936 ntTSL 5 BASIC7.09□□□□□ -1.27
CCDC88AQ3V6T2 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
CCDC88AQ3V6T2 AL360271.1-201ENST00000395679 510 ntBASIC7.09□□□□□ -1.27
CCDC88AQ3V6T2 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC7.09□□□□□ -1.27
CCDC88AQ3V6T2 RAB28P1-201ENST00000411517 641 ntBASIC7.09□□□□□ -1.27
CCDC88AQ3V6T2 AC019205.1-201ENST00000421830 730 ntBASIC7.09□□□□□ -1.27
CCDC88AQ3V6T2 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC7.09□□□□□ -1.27
CCDC88AQ3V6T2 LINC01593-201ENST00000424355 388 ntTSL 5 BASIC7.09□□□□□ -1.27
CCDC88AQ3V6T2 DAP3-209ENST00000465375 729 ntTSL 2 BASIC7.09□□□□□ -1.27
CCDC88AQ3V6T2 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC7.09□□□□□ -1.27
CCDC88AQ3V6T2 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC7.09□□□□□ -1.27
CCDC88AQ3V6T2 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
CCDC88AQ3V6T2 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC7.09□□□□□ -1.27
CCDC88AQ3V6T2 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC7.09□□□□□ -1.27
CCDC88AQ3V6T2 AL596275.2-208ENST00000641192 594 ntBASIC7.09□□□□□ -1.27
CCDC88AQ3V6T2 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
CCDC88AQ3V6T2 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC7.09□□□□□ -1.27
CCDC88AQ3V6T2 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
CCDC88AQ3V6T2 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
CCDC88AQ3V6T2 MAPK10-371ENST00000641952 5209 ntBASIC7.09□□□□□ -1.27
CCDC88AQ3V6T2 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC7.09□□□□□ -1.27
CCDC88AQ3V6T2 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.27
CCDC88AQ3V6T2 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC7.09□□□□□ -1.28
CCDC88AQ3V6T2 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.28
CCDC88AQ3V6T2 SNORA70H-201ENST00000383910 135 ntBASIC7.09□□□□□ -1.28
CCDC88AQ3V6T2 SNORA70J-201ENST00000384182 135 ntBASIC7.09□□□□□ -1.28
CCDC88AQ3V6T2 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC7.09□□□□□ -1.28
CCDC88AQ3V6T2 AC108075.1-201ENST00000424692 529 ntBASIC7.09□□□□□ -1.28
CCDC88AQ3V6T2 AC016027.5-201ENST00000427227 210 ntBASIC7.09□□□□□ -1.28
CCDC88AQ3V6T2 CEACAMP7-201ENST00000444105 496 ntBASIC7.09□□□□□ -1.28
CCDC88AQ3V6T2 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC7.09□□□□□ -1.28
CCDC88AQ3V6T2 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC7.09□□□□□ -1.28
CCDC88AQ3V6T2 AC009120.1-201ENST00000493458 473 ntBASIC7.09□□□□□ -1.28
CCDC88AQ3V6T2 MIR132-201ENST00000591554 101 ntBASIC7.09□□□□□ -1.28
CCDC88AQ3V6T2 PACRG-210ENST00000611387 279 ntTSL 5 BASIC7.09□□□□□ -1.28
CCDC88AQ3V6T2 LINC01739-205ENST00000641890 573 ntBASIC7.09□□□□□ -1.28
CCDC88AQ3V6T2 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC7.08□□□□□ -1.28
CCDC88AQ3V6T2 CCDC162P-202ENST00000368966 6751 ntBASIC7.08□□□□□ -1.28
CCDC88AQ3V6T2 KIF13A-205ENST00000378843 5707 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
CCDC88AQ3V6T2 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms