Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC020656.2-201ENST00000613291 5309 ntBASIC5.54□□□□□ -1.52
FOXA1P55317 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
FOXA1P55317 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
FOXA1P55317 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
FOXA1P55317 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC5.53□□□□□ -1.52
FOXA1P55317 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
FOXA1P55317 RN7SKP184-201ENST00000362348 333 ntBASIC5.53□□□□□ -1.52
FOXA1P55317 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC5.53□□□□□ -1.52
FOXA1P55317 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC5.53□□□□□ -1.52
FOXA1P55317 NIFKP3-201ENST00000417799 865 ntBASIC5.53□□□□□ -1.52
FOXA1P55317 AC019205.1-201ENST00000421830 730 ntBASIC5.53□□□□□ -1.52
FOXA1P55317 RPL6P30-201ENST00000443382 862 ntBASIC5.53□□□□□ -1.52
FOXA1P55317 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
FOXA1P55317 MEMO1P4-201ENST00000453590 386 ntBASIC5.53□□□□□ -1.52
FOXA1P55317 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC5.53□□□□□ -1.52
FOXA1P55317 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC5.53□□□□□ -1.52
FOXA1P55317 RN7SL57P-201ENST00000493687 290 ntBASIC5.53□□□□□ -1.52
FOXA1P55317 RN7SL612P-201ENST00000497704 295 ntBASIC5.53□□□□□ -1.52
FOXA1P55317 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.53□□□□□ -1.52
FOXA1P55317 GLUD1P3-202ENST00000508551 200 ntBASIC5.53□□□□□ -1.52
FOXA1P55317 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
FOXA1P55317 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC5.53□□□□□ -1.52
FOXA1P55317 CASP5-209ENST00000531367 879 ntTSL 5 BASIC5.53□□□□□ -1.52
FOXA1P55317 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC5.53□□□□□ -1.52
FOXA1P55317 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC5.53□□□□□ -1.52
FOXA1P55317 NPM1P5-201ENST00000557228 838 ntBASIC5.53□□□□□ -1.52
FOXA1P55317 AC139099.1-201ENST00000573737 976 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
FOXA1P55317 AC090236.2-201ENST00000587933 1101 ntBASIC5.53□□□□□ -1.52
FOXA1P55317 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC5.53□□□□□ -1.52
FOXA1P55317 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
FOXA1P55317 AC022919.1-201ENST00000624979 626 ntBASIC5.53□□□□□ -1.52
FOXA1P55317 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
FOXA1P55317 AC093225.1-201ENST00000506867 1408 ntBASIC5.53□□□□□ -1.52
FOXA1P55317 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
FOXA1P55317 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
FOXA1P55317 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
FOXA1P55317 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC5.53□□□□□ -1.52
FOXA1P55317 AC018809.2-201ENST00000602436 3823 ntBASIC5.53□□□□□ -1.52
FOXA1P55317 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
FOXA1P55317 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
FOXA1P55317 AC104662.2-201ENST00000512921 1388 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
FOXA1P55317 HSPD1P7-201ENST00000447985 1686 ntBASIC5.53□□□□□ -1.52
FOXA1P55317 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.52□□□□□ -1.53
FOXA1P55317 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
FOXA1P55317 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC5.52□□□□□ -1.53
FOXA1P55317 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
FOXA1P55317 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
FOXA1P55317 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
FOXA1P55317 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.52□□□□□ -1.53
FOXA1P55317 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.52□□□□□ -1.53
FOXA1P55317 RN7SKP145-201ENST00000363291 303 ntBASIC5.52□□□□□ -1.53
FOXA1P55317 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.52□□□□□ -1.53
FOXA1P55317 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.52□□□□□ -1.53
FOXA1P55317 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
FOXA1P55317 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC5.52□□□□□ -1.53
FOXA1P55317 BX284632.2-201ENST00000421091 399 ntBASIC5.52□□□□□ -1.53
FOXA1P55317 OR5W1P-201ENST00000423705 938 ntBASIC5.52□□□□□ -1.53
FOXA1P55317 EIF5AP4-201ENST00000441206 465 ntBASIC5.52□□□□□ -1.53
FOXA1P55317 AL512605.1-202ENST00000441919 381 ntBASIC5.52□□□□□ -1.53
FOXA1P55317 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.52□□□□□ -1.53
FOXA1P55317 AL359955.2-201ENST00000445380 353 ntBASIC5.52□□□□□ -1.53
FOXA1P55317 AC023271.1-201ENST00000445936 1090 ntBASIC5.52□□□□□ -1.53
FOXA1P55317 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC5.52□□□□□ -1.53
FOXA1P55317 CFL1P4-201ENST00000451536 498 ntBASIC5.52□□□□□ -1.53
FOXA1P55317 AC023194.2-201ENST00000465398 406 ntBASIC5.52□□□□□ -1.53
FOXA1P55317 AC104339.1-201ENST00000465478 348 ntBASIC5.52□□□□□ -1.53
FOXA1P55317 AC099521.1-201ENST00000482557 334 ntBASIC5.52□□□□□ -1.53
FOXA1P55317 AC073610.1-201ENST00000489971 396 ntBASIC5.52□□□□□ -1.53
FOXA1P55317 AC097486.1-201ENST00000515331 210 ntBASIC5.52□□□□□ -1.53
FOXA1P55317 CETN3-206ENST00000522864 738 ntTSL 3 BASIC5.52□□□□□ -1.53
FOXA1P55317 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.52□□□□□ -1.53
FOXA1P55317 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC5.52□□□□□ -1.53
FOXA1P55317 TPPP2-208ENST00000530140 703 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
FOXA1P55317 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC5.52□□□□□ -1.53
FOXA1P55317 AL356801.1-201ENST00000559320 294 ntBASIC5.52□□□□□ -1.53
FOXA1P55317 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC5.52□□□□□ -1.53
FOXA1P55317 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.52□□□□□ -1.53
FOXA1P55317 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC5.52□□□□□ -1.53
FOXA1P55317 MIR6793-201ENST00000612376 63 ntBASIC5.52□□□□□ -1.53
FOXA1P55317 MIR6133-201ENST00000617057 108 ntBASIC5.52□□□□□ -1.53
FOXA1P55317 RNA5SP439-201ENST00000617595 124 ntBASIC5.52□□□□□ -1.53
FOXA1P55317 AC245014.3-201ENST00000618589 347 ntBASIC5.52□□□□□ -1.53
FOXA1P55317 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC5.52□□□□□ -1.53
FOXA1P55317 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.52□□□□□ -1.53
FOXA1P55317 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
FOXA1P55317 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
FOXA1P55317 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
FOXA1P55317 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
FOXA1P55317 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
FOXA1P55317 AC007938.2-201ENST00000604666 2634 ntBASIC5.52□□□□□ -1.53
FOXA1P55317 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.52□□□□□ -1.53
FOXA1P55317 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
FOXA1P55317 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
FOXA1P55317 AC104966.1-201ENST00000467010 1464 ntBASIC5.51□□□□□ -1.53
FOXA1P55317 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.51□□□□□ -1.53
FOXA1P55317 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.51□□□□□ -1.53
FOXA1P55317 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
FOXA1P55317 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.51□□□□□ -1.53
FOXA1P55317 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
FOXA1P55317 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms