Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC6.12□□□□□ -1.43
COL4A4P53420 AC092651.1-201ENST00000426110 312 ntBASIC6.12□□□□□ -1.43
COL4A4P53420 RPL7L1P9-201ENST00000431298 745 ntBASIC6.12□□□□□ -1.43
COL4A4P53420 KRT8P51-201ENST00000438938 274 ntBASIC6.12□□□□□ -1.43
COL4A4P53420 AC005297.1-201ENST00000444765 862 ntBASIC6.12□□□□□ -1.43
COL4A4P53420 AP000547.1-201ENST00000454360 617 ntBASIC6.12□□□□□ -1.43
COL4A4P53420 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC6.12□□□□□ -1.43
COL4A4P53420 AL671862.1-201ENST00000515851 349 ntBASIC6.12□□□□□ -1.43
COL4A4P53420 AC139365.2-201ENST00000517972 253 ntBASIC6.12□□□□□ -1.43
COL4A4P53420 AC022832.1-201ENST00000530718 645 ntBASIC6.12□□□□□ -1.43
COL4A4P53420 AC126177.5-201ENST00000549599 178 ntBASIC6.12□□□□□ -1.43
COL4A4P53420 AC126615.2-201ENST00000553003 515 ntBASIC6.12□□□□□ -1.43
COL4A4P53420 CLMN-206ENST00000556441 452 ntTSL 5 BASIC6.12□□□□□ -1.43
COL4A4P53420 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC6.12□□□□□ -1.43
COL4A4P53420 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
COL4A4P53420 MIR4330-201ENST00000579077 105 ntBASIC6.12□□□□□ -1.43
COL4A4P53420 AC079414.3-201ENST00000612986 1090 ntBASIC6.12□□□□□ -1.43
COL4A4P53420 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC6.12□□□□□ -1.43
COL4A4P53420 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC6.12□□□□□ -1.43
COL4A4P53420 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC6.12□□□□□ -1.43
COL4A4P53420 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL4A4P53420 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC6.12□□□□□ -1.43
COL4A4P53420 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
COL4A4P53420 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC6.12□□□□□ -1.43
COL4A4P53420 CACNB4-239ENST00000636947 5575 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL4A4P53420 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL4A4P53420 AC068189.1-201ENST00000501164 2632 ntTSL 2 BASIC6.12□□□□□ -1.43
COL4A4P53420 OLMALINC-203ENST00000641087 3779 ntBASIC6.12□□□□□ -1.43
COL4A4P53420 SOX6-202ENST00000396356 8865 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL4A4P53420 STK3-216ENST00000523601 3107 ntTSL 2 BASIC6.12□□□□□ -1.43
COL4A4P53420 MYO1B-203ENST00000392316 4764 ntTSL 5 BASIC6.12□□□□□ -1.43
COL4A4P53420 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
COL4A4P53420 NUP214-201ENST00000359428 7600 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL4A4P53420 ARHGEF12-201ENST00000356641 6891 ntTSL 5 BASIC6.12□□□□□ -1.43
COL4A4P53420 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL4A4P53420 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC6.12□□□□□ -1.43
COL4A4P53420 MAP4K4-201ENST00000302217 6624 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL4A4P53420 AC104581.5-201ENST00000624171 7141 ntBASIC6.12□□□□□ -1.43
COL4A4P53420 TMEM246-203ENST00000374851 5070 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL4A4P53420 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
COL4A4P53420 MMACHC-201ENST00000401061 5296 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
COL4A4P53420 ANKRD36BP2-207ENST00000622311 5398 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL4A4P53420 URB1-201ENST00000382751 10832 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL4A4P53420 AC009831.5-201ENST00000624000 3189 ntBASIC6.11□□□□□ -1.43
COL4A4P53420 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL4A4P53420 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC6.11□□□□□ -1.43
COL4A4P53420 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC6.11□□□□□ -1.43
COL4A4P53420 AC005294.1-201ENST00000355509 281 ntBASIC6.11□□□□□ -1.43
COL4A4P53420 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
COL4A4P53420 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC6.11□□□□□ -1.43
COL4A4P53420 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC6.11□□□□□ -1.43
COL4A4P53420 PA2G4P6-201ENST00000438325 1197 ntBASIC6.11□□□□□ -1.43
COL4A4P53420 HCG14-201ENST00000444986 413 ntTSL 2 BASIC6.11□□□□□ -1.43
COL4A4P53420 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC6.11□□□□□ -1.43
COL4A4P53420 HNRNPCP1-201ENST00000556181 766 ntBASIC6.11□□□□□ -1.43
COL4A4P53420 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC6.11□□□□□ -1.43
COL4A4P53420 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC6.11□□□□□ -1.43
COL4A4P53420 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL4A4P53420 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC6.11□□□□□ -1.43
COL4A4P53420 ARL6-204ENST00000463745 4231 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
COL4A4P53420 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
COL4A4P53420 VTI1A-201ENST00000393077 4131 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
COL4A4P53420 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL4A4P53420 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL4A4P53420 CLEC2D-203ENST00000290855 5279 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL4A4P53420 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
COL4A4P53420 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC6.11□□□□□ -1.43
COL4A4P53420 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC6.11□□□□□ -1.43
COL4A4P53420 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC6.1□□□□□ -1.43
COL4A4P53420 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL4A4P53420 MIR130A-201ENST00000385274 89 ntBASIC6.1□□□□□ -1.43
COL4A4P53420 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC6.1□□□□□ -1.43
COL4A4P53420 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC6.1□□□□□ -1.43
COL4A4P53420 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC6.1□□□□□ -1.43
COL4A4P53420 AL390879.1-201ENST00000439143 386 ntBASIC6.1□□□□□ -1.43
COL4A4P53420 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL4A4P53420 AC092106.1-201ENST00000444291 373 ntBASIC6.1□□□□□ -1.43
COL4A4P53420 DNAJB5P1-201ENST00000454004 806 ntBASIC6.1□□□□□ -1.43
COL4A4P53420 AZGP1P2-201ENST00000454506 345 ntBASIC6.1□□□□□ -1.43
COL4A4P53420 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC6.1□□□□□ -1.43
COL4A4P53420 ACA64.4-201ENST00000459070 127 ntBASIC6.1□□□□□ -1.43
COL4A4P53420 PGAM1P13-201ENST00000507497 754 ntBASIC6.1□□□□□ -1.43
COL4A4P53420 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC6.1□□□□□ -1.43
COL4A4P53420 IGHVIII-76-1-201ENST00000523776 286 ntBASIC6.1□□□□□ -1.43
COL4A4P53420 BMPR1APS2-201ENST00000527904 1012 ntBASIC6.1□□□□□ -1.43
COL4A4P53420 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC6.1□□□□□ -1.43
COL4A4P53420 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC6.1□□□□□ -1.43
COL4A4P53420 AC006115.2-201ENST00000596823 202 ntBASIC6.1□□□□□ -1.43
COL4A4P53420 AC000068.2-201ENST00000608816 460 ntBASIC6.1□□□□□ -1.43
COL4A4P53420 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC6.1□□□□□ -1.43
COL4A4P53420 AC016251.2-201ENST00000623393 3089 ntBASIC6.1□□□□□ -1.43
COL4A4P53420 PROX1-202ENST00000366958 8240 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL4A4P53420 PHIP-201ENST00000275034 10460 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL4A4P53420 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL4A4P53420 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC6.1□□□□□ -1.43
COL4A4P53420 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL4A4P53420 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
COL4A4P53420 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC6.1□□□□□ -1.43
COL4A4P53420 AKR1C1-202ENST00000380872 6705 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
COL4A4P53420 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms