Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SNORA70.8-201ENST00000384231 136 ntBASIC7.3□□□□□ -1.24
LIG3P49916 TRBV19-201ENST00000390393 552 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
LIG3P49916 NUDT19P3-201ENST00000404698 555 ntBASIC7.3□□□□□ -1.24
LIG3P49916 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC7.3□□□□□ -1.24
LIG3P49916 KCND3-AS1-201ENST00000419258 383 ntTSL 3 BASIC7.3□□□□□ -1.24
LIG3P49916 CLYBL-AS2-201ENST00000430125 695 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
LIG3P49916 MOB1AP1-201ENST00000430903 535 ntBASIC7.3□□□□□ -1.24
LIG3P49916 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC7.3□□□□□ -1.24
LIG3P49916 HNRNPA1P57-201ENST00000431359 530 ntTSL 4 BASIC7.3□□□□□ -1.24
LIG3P49916 AL161626.1-201ENST00000441480 490 ntBASIC7.3□□□□□ -1.24
LIG3P49916 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC7.3□□□□□ -1.24
LIG3P49916 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC7.3□□□□□ -1.24
LIG3P49916 AL392046.1-201ENST00000450742 569 ntTSL 5 BASIC7.3□□□□□ -1.24
LIG3P49916 NPM1P13-201ENST00000452663 865 ntBASIC7.3□□□□□ -1.24
LIG3P49916 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC7.3□□□□□ -1.24
LIG3P49916 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC7.3□□□□□ -1.24
LIG3P49916 AC026336.1-201ENST00000466577 351 ntBASIC7.3□□□□□ -1.24
LIG3P49916 SYPL1P1-201ENST00000473622 768 ntBASIC7.3□□□□□ -1.24
LIG3P49916 AC079594.1-201ENST00000489757 331 ntBASIC7.3□□□□□ -1.24
LIG3P49916 RPS10P20-201ENST00000494130 463 ntBASIC7.3□□□□□ -1.24
LIG3P49916 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
LIG3P49916 AC107401.1-201ENST00000503426 685 ntBASIC7.3□□□□□ -1.24
LIG3P49916 MGST2-204ENST00000506797 634 ntTSL 2 BASIC7.3□□□□□ -1.24
LIG3P49916 AC113347.3-201ENST00000509113 148 ntBASIC7.3□□□□□ -1.24
LIG3P49916 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC7.3□□□□□ -1.24
LIG3P49916 AC037450.1-201ENST00000518129 647 ntTSL 3 BASIC7.3□□□□□ -1.24
LIG3P49916 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC7.3□□□□□ -1.24
LIG3P49916 LINC01603-202ENST00000519557 712 ntTSL 3 BASIC7.3□□□□□ -1.24
LIG3P49916 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC7.3□□□□□ -1.24
LIG3P49916 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC7.3□□□□□ -1.24
LIG3P49916 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC7.3□□□□□ -1.24
LIG3P49916 ELOCP32-201ENST00000548625 324 ntBASIC7.3□□□□□ -1.24
LIG3P49916 AC010198.2-201ENST00000550612 259 ntBASIC7.3□□□□□ -1.24
LIG3P49916 LINC01028-201ENST00000586373 1045 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
LIG3P49916 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC7.3□□□□□ -1.24
LIG3P49916 NUTM2B-AS1-209ENST00000596088 366 ntTSL 3 BASIC7.3□□□□□ -1.24
LIG3P49916 AC023513.1-201ENST00000604396 691 ntBASIC7.3□□□□□ -1.24
LIG3P49916 AC016747.2-203ENST00000606876 289 ntTSL 3 BASIC7.3□□□□□ -1.24
LIG3P49916 AL136985.2-201ENST00000607372 535 ntBASIC7.3□□□□□ -1.24
LIG3P49916 AC073862.4-201ENST00000622982 854 ntBASIC7.3□□□□□ -1.24
LIG3P49916 AC034229.6-201ENST00000623704 224 ntBASIC7.3□□□□□ -1.24
LIG3P49916 PDAP1-205ENST00000626285 120 ntTSL 5 BASIC7.3□□□□□ -1.24
LIG3P49916 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC7.3□□□□□ -1.24
LIG3P49916 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC7.3□□□□□ -1.24
LIG3P49916 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
LIG3P49916 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
LIG3P49916 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC7.3□□□□□ -1.24
LIG3P49916 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
LIG3P49916 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC7.3□□□□□ -1.24
LIG3P49916 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC7.3□□□□□ -1.24
LIG3P49916 DAZ1-203ENST00000426000 1846 ntTSL 5 BASIC7.29□□□□□ -1.24
LIG3P49916 LRRC37A12P-201ENST00000454917 1801 ntBASIC7.29□□□□□ -1.24
LIG3P49916 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
LIG3P49916 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
LIG3P49916 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC7.29□□□□□ -1.24
LIG3P49916 PSG9-206ENST00000593948 1429 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
LIG3P49916 AC022905.1-201ENST00000503430 3048 ntBASIC7.29□□□□□ -1.24
LIG3P49916 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC7.29□□□□□ -1.24
LIG3P49916 AIG1-209ENST00000629020 3636 ntTSL 2 BASIC7.29□□□□□ -1.24
LIG3P49916 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
LIG3P49916 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC7.29□□□□□ -1.24
LIG3P49916 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC7.29□□□□□ -1.24
LIG3P49916 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC7.29□□□□□ -1.24
LIG3P49916 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC7.29□□□□□ -1.24
LIG3P49916 RN7SKP257-201ENST00000364525 309 ntBASIC7.29□□□□□ -1.24
LIG3P49916 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
LIG3P49916 OOSP1-201ENST00000398992 1270 ntBASIC7.29□□□□□ -1.24
LIG3P49916 CNN3P1-201ENST00000401596 935 ntBASIC7.29□□□□□ -1.24
LIG3P49916 RPL31-204ENST00000409038 817 ntTSL 2 BASIC7.29□□□□□ -1.24
LIG3P49916 CDY17P-201ENST00000414121 1282 ntBASIC7.29□□□□□ -1.24
LIG3P49916 CYTOR-207ENST00000414584 772 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
LIG3P49916 AC007349.3-201ENST00000415356 872 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
LIG3P49916 OR4K6P-201ENST00000416478 897 ntBASIC7.29□□□□□ -1.24
LIG3P49916 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC7.29□□□□□ -1.24
LIG3P49916 CDY8P-201ENST00000428380 1279 ntBASIC7.29□□□□□ -1.24
LIG3P49916 DLGAP5P1-201ENST00000430307 464 ntBASIC7.29□□□□□ -1.24
LIG3P49916 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC7.29□□□□□ -1.24
LIG3P49916 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC7.29□□□□□ -1.24
LIG3P49916 MTND1P32-201ENST00000433043 938 ntBASIC7.29□□□□□ -1.24
LIG3P49916 TRIM60P9Y-201ENST00000438459 816 ntBASIC7.29□□□□□ -1.24
LIG3P49916 EMC3-AS1-205ENST00000438698 534 ntBASIC7.29□□□□□ -1.24
LIG3P49916 AL021937.4-201ENST00000444848 444 ntTSL 3 BASIC7.29□□□□□ -1.24
LIG3P49916 TRIM60P11Y-201ENST00000445313 801 ntBASIC7.29□□□□□ -1.24
LIG3P49916 CDY20P-201ENST00000447528 1279 ntBASIC7.29□□□□□ -1.24
LIG3P49916 AL450263.1-202ENST00000453199 643 ntTSL 3 BASIC7.29□□□□□ -1.24
LIG3P49916 RPS4XP19-201ENST00000460237 736 ntBASIC7.29□□□□□ -1.24
LIG3P49916 RN7SL392P-201ENST00000473024 299 ntBASIC7.29□□□□□ -1.24
LIG3P49916 RN7SL776P-201ENST00000493390 268 ntBASIC7.29□□□□□ -1.24
LIG3P49916 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
LIG3P49916 AC011352.1-201ENST00000512300 793 ntBASIC7.29□□□□□ -1.24
LIG3P49916 MTND3P5-201ENST00000512798 333 ntBASIC7.29□□□□□ -1.24
LIG3P49916 AC055860.1-201ENST00000525523 688 ntTSL 5 BASIC7.29□□□□□ -1.24
LIG3P49916 LYZ-202ENST00000548839 558 ntTSL 2 BASIC7.29□□□□□ -1.24
LIG3P49916 AC009729.1-201ENST00000548873 1133 ntBASIC7.29□□□□□ -1.24
LIG3P49916 BMS1P15-201ENST00000554269 1141 ntBASIC7.29□□□□□ -1.24
LIG3P49916 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC7.29□□□□□ -1.24
LIG3P49916 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC7.29□□□□□ -1.24
LIG3P49916 AC004494.1-202ENST00000573820 480 ntTSL 4 BASIC7.29□□□□□ -1.24
LIG3P49916 MIR4301-201ENST00000577203 66 ntBASIC7.29□□□□□ -1.24
LIG3P49916 CCDC58P1-201ENST00000578567 430 ntBASIC7.29□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 75 ms