Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AL591167.1-201ENST00000607321 456 ntBASIC5.13□□□□□ -1.59
USF1P22415 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC5.13□□□□□ -1.59
USF1P22415 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
USF1P22415 AC015689.2-201ENST00000528172 1738 ntBASIC5.13□□□□□ -1.59
USF1P22415 AC022325.1-201ENST00000502748 2199 ntBASIC5.13□□□□□ -1.59
USF1P22415 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
USF1P22415 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC5.13□□□□□ -1.59
USF1P22415 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
USF1P22415 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
USF1P22415 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
USF1P22415 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC5.13□□□□□ -1.59
USF1P22415 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
USF1P22415 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
USF1P22415 AL592429.1-201ENST00000403909 1473 ntBASIC5.13□□□□□ -1.59
USF1P22415 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.13□□□□□ -1.59
USF1P22415 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.13□□□□□ -1.59
USF1P22415 BIN2P1-201ENST00000504996 1530 ntBASIC5.13□□□□□ -1.59
USF1P22415 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC5.12□□□□□ -1.59
USF1P22415 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
USF1P22415 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
USF1P22415 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC5.12□□□□□ -1.59
USF1P22415 AC011416.1-201ENST00000514947 1732 ntBASIC5.12□□□□□ -1.59
USF1P22415 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC5.12□□□□□ -1.59
USF1P22415 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC5.12□□□□□ -1.59
USF1P22415 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
USF1P22415 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC5.12□□□□□ -1.59
USF1P22415 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
USF1P22415 TMA16P2-201ENST00000413187 601 ntBASIC5.12□□□□□ -1.59
USF1P22415 Z68694.1-201ENST00000413929 841 ntBASIC5.12□□□□□ -1.59
USF1P22415 AC016769.2-201ENST00000414815 475 ntBASIC5.12□□□□□ -1.59
USF1P22415 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC5.12□□□□□ -1.59
USF1P22415 HNRNPA1P18-201ENST00000433537 927 ntBASIC5.12□□□□□ -1.59
USF1P22415 GAPDHP75-201ENST00000433910 943 ntBASIC5.12□□□□□ -1.59
USF1P22415 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC5.12□□□□□ -1.59
USF1P22415 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC5.12□□□□□ -1.59
USF1P22415 HMGN1P36-201ENST00000446623 298 ntBASIC5.12□□□□□ -1.59
USF1P22415 AL445665.1-202ENST00000452436 324 ntBASIC5.12□□□□□ -1.59
USF1P22415 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC5.12□□□□□ -1.59
USF1P22415 RN7SL717P-201ENST00000478343 297 ntBASIC5.12□□□□□ -1.59
USF1P22415 AC012123.2-201ENST00000485809 248 ntBASIC5.12□□□□□ -1.59
USF1P22415 RPL7L1P4-201ENST00000513004 707 ntBASIC5.12□□□□□ -1.59
USF1P22415 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC5.12□□□□□ -1.59
USF1P22415 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC5.12□□□□□ -1.59
USF1P22415 RNA5SP400-201ENST00000517155 111 ntBASIC5.12□□□□□ -1.59
USF1P22415 AC112191.2-201ENST00000522428 333 ntBASIC5.12□□□□□ -1.59
USF1P22415 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
USF1P22415 AL121579.2-201ENST00000555466 590 ntBASIC5.12□□□□□ -1.59
USF1P22415 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC5.12□□□□□ -1.59
USF1P22415 AC016839.1-201ENST00000578162 867 ntBASIC5.12□□□□□ -1.59
USF1P22415 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
USF1P22415 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC5.12□□□□□ -1.59
USF1P22415 AC008555.7-201ENST00000605008 583 ntBASIC5.12□□□□□ -1.59
USF1P22415 AL645933.2-201ENST00000606743 1207 ntBASIC5.12□□□□□ -1.59
USF1P22415 AC241377.1-201ENST00000619797 406 ntBASIC5.12□□□□□ -1.59
USF1P22415 AL353684.1-201ENST00000622677 1120 ntBASIC5.12□□□□□ -1.59
USF1P22415 CIR1P2-201ENST00000514821 1342 ntBASIC5.12□□□□□ -1.59
USF1P22415 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
USF1P22415 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
USF1P22415 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
USF1P22415 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC5.12□□□□□ -1.59
USF1P22415 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
USF1P22415 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
USF1P22415 PSG10P-201ENST00000501199 1500 ntBASIC5.12□□□□□ -1.59
USF1P22415 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
USF1P22415 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
USF1P22415 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
USF1P22415 RNF19BPY-201ENST00000458209 1550 ntBASIC5.12□□□□□ -1.59
USF1P22415 AF287957.1-201ENST00000607368 1595 ntBASIC5.12□□□□□ -1.59
USF1P22415 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
USF1P22415 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC5.12□□□□□ -1.59
USF1P22415 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
USF1P22415 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC5.11□□□□□ -1.59
USF1P22415 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
USF1P22415 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.11□□□□□ -1.59
USF1P22415 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC5.11□□□□□ -1.59
USF1P22415 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
USF1P22415 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
USF1P22415 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC5.11□□□□□ -1.59
USF1P22415 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC5.11□□□□□ -1.59
USF1P22415 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
USF1P22415 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
USF1P22415 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
USF1P22415 TMSB4XP2-201ENST00000335179 210 ntBASIC5.11□□□□□ -1.59
USF1P22415 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC5.11□□□□□ -1.59
USF1P22415 RPS3AP2-201ENST00000407190 754 ntBASIC5.11□□□□□ -1.59
USF1P22415 MIR1203-201ENST00000408812 85 ntBASIC5.11□□□□□ -1.59
USF1P22415 RN7SKP286-201ENST00000410894 299 ntBASIC5.11□□□□□ -1.59
USF1P22415 SDHDP6-201ENST00000414693 480 ntBASIC5.11□□□□□ -1.59
USF1P22415 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC5.11□□□□□ -1.59
USF1P22415 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC5.11□□□□□ -1.59
USF1P22415 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
USF1P22415 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC5.11□□□□□ -1.59
USF1P22415 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC5.11□□□□□ -1.59
USF1P22415 NDUFS5P5-201ENST00000437256 321 ntBASIC5.11□□□□□ -1.59
USF1P22415 VN1R110P-201ENST00000438988 971 ntBASIC5.11□□□□□ -1.59
USF1P22415 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC5.11□□□□□ -1.59
USF1P22415 RPL36AP39-201ENST00000445859 318 ntBASIC5.11□□□□□ -1.59
USF1P22415 RPL7L1P3-201ENST00000455249 689 ntBASIC5.11□□□□□ -1.59
USF1P22415 AC103563.5-201ENST00000455643 364 ntBASIC5.11□□□□□ -1.59
USF1P22415 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms