Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.51
ATG4BQ9Y4P1 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.51
ATG4BQ9Y4P1 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC5.65□□□□□ -1.51
ATG4BQ9Y4P1 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC5.65□□□□□ -1.51
ATG4BQ9Y4P1 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
ATG4BQ9Y4P1 AC116158.1-201ENST00000560231 2129 ntBASIC5.65□□□□□ -1.51
ATG4BQ9Y4P1 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
ATG4BQ9Y4P1 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
ATG4BQ9Y4P1 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 RNA5SP211-201ENST00000365516 117 ntBASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 RPS26P38-201ENST00000414476 348 ntBASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 AC099677.3-201ENST00000427081 395 ntBASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 ATP5LP2-201ENST00000440646 311 ntBASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 RPS7P3-201ENST00000443360 580 ntBASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 AC023194.2-201ENST00000465398 406 ntBASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 AC023245.1-201ENST00000468501 517 ntBASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 AC092865.4-201ENST00000477936 615 ntBASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 AC008629.2-201ENST00000503783 483 ntBASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 IGKV1OR22-1-201ENST00000521497 360 ntBASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 AC005726.4-201ENST00000582858 458 ntBASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 AC012254.3-201ENST00000591183 2117 ntBASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 AL021918.2-201ENST00000613415 194 ntBASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 AP001153.1-201ENST00000641024 338 ntBASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 IMMTP1-201ENST00000435590 2219 ntBASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 AC083837.1-201ENST00000565297 2994 ntBASIC5.64□□□□□ -1.51
ATG4BQ9Y4P1 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 AC130304.1-201ENST00000622942 2385 ntBASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 RNFT1P3-201ENST00000340898 1052 ntBASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 AC090616.2-201ENST00000358484 431 ntTSL 3 BASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 SNORD1C-201ENST00000363315 78 ntBASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 GNG5P2-201ENST00000372054 207 ntBASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 GAPDHP75-201ENST00000433910 943 ntBASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 AL390879.1-201ENST00000439143 386 ntBASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 AC005077.1-201ENST00000449226 375 ntBASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 OR52Y1P-201ENST00000452418 828 ntBASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 AP002371.1-201ENST00000463604 433 ntBASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 CR383656.1-201ENST00000484916 377 ntBASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 TOMM22P4-201ENST00000511318 336 ntBASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 RNA5SP340-201ENST00000517132 107 ntBASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 OR4A6P-201ENST00000534364 970 ntBASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 AC090826.1-203ENST00000569235 490 ntBASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 MIR6809-201ENST00000612189 116 ntBASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 SNX18P12-201ENST00000624821 759 ntBASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 RFC1-217ENST00000639695 867 ntTSL 5 BASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 AC233968.1-201ENST00000611212 1300 ntBASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC5.63□□□□□ -1.51
ATG4BQ9Y4P1 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.62□□□□□ -1.51
ATG4BQ9Y4P1 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms