Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 GNL2P1-201ENST00000451274 2190 ntBASIC5.88□□□□□ -1.47
CCDC3Q9BQI4 AC233968.1-201ENST00000611212 1300 ntBASIC5.88□□□□□ -1.47
CCDC3Q9BQI4 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC5.88□□□□□ -1.47
CCDC3Q9BQI4 NEPNP-201ENST00000404786 1371 ntBASIC5.88□□□□□ -1.47
CCDC3Q9BQI4 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
CCDC3Q9BQI4 RBPJP7-201ENST00000442803 1447 ntBASIC5.88□□□□□ -1.47
CCDC3Q9BQI4 RBPJP5-201ENST00000449433 1447 ntBASIC5.88□□□□□ -1.47
CCDC3Q9BQI4 WDR95P-201ENST00000425638 1542 ntBASIC5.88□□□□□ -1.47
CCDC3Q9BQI4 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
CCDC3Q9BQI4 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC3Q9BQI4 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC3Q9BQI4 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 RNU1-150P-201ENST00000362491 162 ntBASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 RNA5SP375-201ENST00000362975 119 ntBASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 PPCS-201ENST00000372556 984 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 RPS3AP2-201ENST00000407190 754 ntBASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 GAS5-202ENST00000414075 413 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 AL512637.1-201ENST00000439523 1231 ntBASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 AC016027.4-201ENST00000450866 277 ntBASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 AC023141.9-201ENST00000458734 412 ntBASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 AC073594.1-201ENST00000462065 364 ntBASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 RPSAP37-201ENST00000470913 821 ntBASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 RPL17P2-201ENST00000491913 451 ntBASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 RPL7L1P4-201ENST00000513004 707 ntBASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 LECT2-205ENST00000522943 574 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 AP000648.1-201ENST00000529682 397 ntBASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 CASP5-209ENST00000531367 879 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 AL031601.1-201ENST00000605702 394 ntBASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 AL136131.3-201ENST00000607600 188 ntBASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 RN7SL787P-201ENST00000613000 284 ntBASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 AC096861.1-201ENST00000616652 240 ntBASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 AL137067.2-201ENST00000621202 131 ntBASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 OR8G3P-202ENST00000641572 1255 ntBASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 CIR1P2-201ENST00000514821 1342 ntBASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 HDAC1P2-201ENST00000453661 1398 ntBASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 ING3-204ENST00000431467 1447 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 AC027088.4-201ENST00000611559 1947 ntBASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
CCDC3Q9BQI4 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC3Q9BQI4 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC5.86□□□□□ -1.47
CCDC3Q9BQI4 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
CCDC3Q9BQI4 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC3Q9BQI4 AC012254.3-201ENST00000591183 2117 ntBASIC5.86□□□□□ -1.47
CCDC3Q9BQI4 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC3Q9BQI4 AC096921.2-201ENST00000561507 1916 ntBASIC5.86□□□□□ -1.47
CCDC3Q9BQI4 AC006511.3-201ENST00000624929 1783 ntBASIC5.86□□□□□ -1.47
CCDC3Q9BQI4 RARSP1-201ENST00000542842 1418 ntBASIC5.86□□□□□ -1.47
CCDC3Q9BQI4 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC3Q9BQI4 CR383656.5-201ENST00000547616 1340 ntBASIC5.86□□□□□ -1.47
CCDC3Q9BQI4 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
CCDC3Q9BQI4 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC3Q9BQI4 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
CCDC3Q9BQI4 Z68694.1-201ENST00000413929 841 ntBASIC5.86□□□□□ -1.47
CCDC3Q9BQI4 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC5.86□□□□□ -1.47
CCDC3Q9BQI4 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC5.86□□□□□ -1.47
CCDC3Q9BQI4 RPS17P17-201ENST00000419392 409 ntBASIC5.86□□□□□ -1.47
CCDC3Q9BQI4 BX119321.1-201ENST00000428912 797 ntBASIC5.86□□□□□ -1.47
CCDC3Q9BQI4 AC064862.4-201ENST00000442180 334 ntBASIC5.86□□□□□ -1.47
CCDC3Q9BQI4 DNAJC19P5-201ENST00000443295 316 ntBASIC5.86□□□□□ -1.47
CCDC3Q9BQI4 AL451063.1-201ENST00000450164 1133 ntBASIC5.86□□□□□ -1.47
CCDC3Q9BQI4 YWHAEP1-201ENST00000453697 763 ntBASIC5.86□□□□□ -1.47
CCDC3Q9BQI4 RAB28P2-201ENST00000454299 641 ntBASIC5.86□□□□□ -1.47
CCDC3Q9BQI4 RN7SL269P-201ENST00000467795 305 ntBASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms