Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC5.24□□□□□ -1.57
NKX3-1Q99801 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC5.24□□□□□ -1.57
NKX3-1Q99801 TRIM60P13-201ENST00000432350 1283 ntBASIC5.24□□□□□ -1.57
NKX3-1Q99801 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC5.24□□□□□ -1.57
NKX3-1Q99801 PPIAP10-201ENST00000438675 458 ntBASIC5.24□□□□□ -1.57
NKX3-1Q99801 SOCS5P1-201ENST00000440415 949 ntBASIC5.24□□□□□ -1.57
NKX3-1Q99801 AC017099.1-201ENST00000448261 1028 ntBASIC5.24□□□□□ -1.57
NKX3-1Q99801 AL162739.1-201ENST00000450606 307 ntBASIC5.24□□□□□ -1.57
NKX3-1Q99801 AL513343.1-201ENST00000451818 792 ntBASIC5.24□□□□□ -1.57
NKX3-1Q99801 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC5.24□□□□□ -1.57
NKX3-1Q99801 ACA64.4-201ENST00000459070 127 ntBASIC5.24□□□□□ -1.57
NKX3-1Q99801 AC089999.1-201ENST00000460336 374 ntBASIC5.24□□□□□ -1.57
NKX3-1Q99801 RN7SL643P-201ENST00000471845 291 ntBASIC5.24□□□□□ -1.57
NKX3-1Q99801 LINC01322-202ENST00000494915 594 ntTSL 4 BASIC5.24□□□□□ -1.57
NKX3-1Q99801 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC5.24□□□□□ -1.57
NKX3-1Q99801 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC5.24□□□□□ -1.57
NKX3-1Q99801 GUSBP9-201ENST00000510138 584 ntBASIC5.24□□□□□ -1.57
NKX3-1Q99801 AC145141.1-201ENST00000510180 567 ntTSL 4 BASIC5.24□□□□□ -1.57
NKX3-1Q99801 TOMM22P4-201ENST00000511318 336 ntBASIC5.24□□□□□ -1.57
NKX3-1Q99801 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC5.24□□□□□ -1.57
NKX3-1Q99801 KCTD9P6-201ENST00000522306 950 ntBASIC5.24□□□□□ -1.57
NKX3-1Q99801 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
NKX3-1Q99801 AC135983.3-201ENST00000528049 1226 ntBASIC5.24□□□□□ -1.57
NKX3-1Q99801 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
NKX3-1Q99801 AC025423.2-201ENST00000537570 439 ntBASIC5.24□□□□□ -1.57
NKX3-1Q99801 AL049874.4-201ENST00000557593 255 ntBASIC5.24□□□□□ -1.57
NKX3-1Q99801 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
NKX3-1Q99801 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.24□□□□□ -1.57
NKX3-1Q99801 MIR3908-201ENST00000579798 126 ntBASIC5.24□□□□□ -1.57
NKX3-1Q99801 AC008555.7-201ENST00000605008 583 ntBASIC5.24□□□□□ -1.57
NKX3-1Q99801 AC141002.1-201ENST00000607025 279 ntBASIC5.24□□□□□ -1.57
NKX3-1Q99801 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC5.24□□□□□ -1.57
NKX3-1Q99801 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC5.24□□□□□ -1.57
NKX3-1Q99801 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.24□□□□□ -1.57
NKX3-1Q99801 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
NKX3-1Q99801 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC5.24□□□□□ -1.57
NKX3-1Q99801 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.24□□□□□ -1.57
NKX3-1Q99801 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.24□□□□□ -1.57
NKX3-1Q99801 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
NKX3-1Q99801 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
NKX3-1Q99801 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
NKX3-1Q99801 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC5.24□□□□□ -1.57
NKX3-1Q99801 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.24□□□□□ -1.57
NKX3-1Q99801 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
NKX3-1Q99801 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 CASC19-246ENST00000641625 1606 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
NKX3-1Q99801 AL359091.1-201ENST00000449048 1734 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
NKX3-1Q99801 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
NKX3-1Q99801 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
NKX3-1Q99801 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
NKX3-1Q99801 AC232271.1-201ENST00000602455 2715 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 CLC-201ENST00000221804 635 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
NKX3-1Q99801 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 OR51J1-201ENST00000332043 951 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 AL607077.1-201ENST00000401718 499 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 VN1R12P-201ENST00000403778 876 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 AL136116.2-201ENST00000404020 785 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
NKX3-1Q99801 RPL21P50-201ENST00000417698 477 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 AC021876.1-201ENST00000425959 359 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 AC002069.1-201ENST00000429649 1159 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 AC211433.1-202ENST00000434256 1187 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
NKX3-1Q99801 Z85994.2-201ENST00000434327 452 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 OR52Y1P-201ENST00000452418 828 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 RAB28P2-201ENST00000454299 641 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 AC118758.1-202ENST00000454719 225 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 TAAR4P-201ENST00000454843 1039 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 TPRKBP1-201ENST00000456243 481 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 HMGN1P8-201ENST00000463578 288 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 RN7SL352P-201ENST00000466002 277 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 RN7SL326P-201ENST00000477493 296 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 RN7SL568P-201ENST00000493069 298 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 OR6M2P-201ENST00000529831 871 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 AC009268.1-201ENST00000561352 1203 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 AC009167.1-201ENST00000568317 579 ntTSL 4 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 AC136443.4-201ENST00000568759 579 ntTSL 4 BASIC5.23□□□□□ -1.57
NKX3-1Q99801 AC023389.2-201ENST00000580031 955 ntBASIC5.23□□□□□ -1.57
NKX3-1Q99801 SEPT4-AS1-202ENST00000580589 653 ntTSL 3 BASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms