Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC6.23□□□□□ -1.41
CCDC42Q96M95 AL035661.1-201ENST00000620459 1144 ntBASIC6.23□□□□□ -1.41
CCDC42Q96M95 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC6.23□□□□□ -1.41
CCDC42Q96M95 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC6.23□□□□□ -1.41
CCDC42Q96M95 MANSC1-204ENST00000545735 1501 ntTSL 2 BASIC6.23□□□□□ -1.41
CCDC42Q96M95 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC6.23□□□□□ -1.41
CCDC42Q96M95 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC42Q96M95 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC42Q96M95 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
CCDC42Q96M95 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC42Q96M95 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC42Q96M95 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC6.22□□□□□ -1.41
CCDC42Q96M95 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
CCDC42Q96M95 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC6.22□□□□□ -1.41
CCDC42Q96M95 NADK2-201ENST00000282512 2507 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC42Q96M95 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC42Q96M95 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC42Q96M95 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC6.22□□□□□ -1.41
CCDC42Q96M95 TRGV3-201ENST00000390346 537 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
CCDC42Q96M95 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
CCDC42Q96M95 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC42Q96M95 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC42Q96M95 AC009506.2-201ENST00000420635 840 ntBASIC6.22□□□□□ -1.41
CCDC42Q96M95 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC42Q96M95 KIF4CP-201ENST00000422742 1279 ntBASIC6.22□□□□□ -1.41
CCDC42Q96M95 DEFA9P-201ENST00000433042 285 ntBASIC6.22□□□□□ -1.41
CCDC42Q96M95 AL353662.1-201ENST00000439099 327 ntBASIC6.22□□□□□ -1.41
CCDC42Q96M95 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC42Q96M95 AC004890.1-201ENST00000461005 181 ntBASIC6.22□□□□□ -1.41
CCDC42Q96M95 AL157777.1-201ENST00000468100 304 ntBASIC6.22□□□□□ -1.41
CCDC42Q96M95 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC42Q96M95 AC005017.1-201ENST00000482002 490 ntBASIC6.22□□□□□ -1.41
CCDC42Q96M95 MAST4-IT1-201ENST00000514241 658 ntBASIC6.22□□□□□ -1.41
CCDC42Q96M95 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC6.22□□□□□ -1.41
CCDC42Q96M95 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC6.22□□□□□ -1.41
CCDC42Q96M95 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC42Q96M95 AL359232.1-202ENST00000556874 1206 ntTSL 2 BASIC6.22□□□□□ -1.41
CCDC42Q96M95 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC6.22□□□□□ -1.41
CCDC42Q96M95 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC42Q96M95 WBP1LP12-201ENST00000604449 331 ntBASIC6.22□□□□□ -1.41
CCDC42Q96M95 RPL12P48-201ENST00000605620 304 ntBASIC6.22□□□□□ -1.41
CCDC42Q96M95 FAM27E2-201ENST00000619668 403 ntBASIC6.22□□□□□ -1.41
CCDC42Q96M95 AL109924.4-201ENST00000623089 670 ntBASIC6.22□□□□□ -1.41
CCDC42Q96M95 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC6.22□□□□□ -1.41
CCDC42Q96M95 AC073488.6-201ENST00000632293 754 ntBASIC6.22□□□□□ -1.41
CCDC42Q96M95 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC6.22□□□□□ -1.41
CCDC42Q96M95 OR11H2-202ENST00000641517 1085 ntBASIC6.22□□□□□ -1.41
CCDC42Q96M95 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC6.22□□□□□ -1.41
CCDC42Q96M95 PARP4P2-201ENST00000446672 3326 ntBASIC6.22□□□□□ -1.41
CCDC42Q96M95 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC6.22□□□□□ -1.41
CCDC42Q96M95 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC6.22□□□□□ -1.41
CCDC42Q96M95 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC42Q96M95 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC6.22□□□□□ -1.41
CCDC42Q96M95 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
CCDC42Q96M95 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC6.22□□□□□ -1.41
CCDC42Q96M95 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC42Q96M95 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
CCDC42Q96M95 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.41
CCDC42Q96M95 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC6.21□□□□□ -1.41
CCDC42Q96M95 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC6.21□□□□□ -1.41
CCDC42Q96M95 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
CCDC42Q96M95 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.41
CCDC42Q96M95 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC6.21□□□□□ -1.41
CCDC42Q96M95 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC6.21□□□□□ -1.41
CCDC42Q96M95 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC6.21□□□□□ -1.42
CCDC42Q96M95 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC42Q96M95 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC6.21□□□□□ -1.42
CCDC42Q96M95 AL442128.2-201ENST00000620246 1824 ntBASIC6.21□□□□□ -1.42
CCDC42Q96M95 TINAG-203ENST00000370869 782 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC42Q96M95 ADAM24P-201ENST00000398655 2101 ntBASIC6.21□□□□□ -1.42
CCDC42Q96M95 RN7SKP38-201ENST00000410782 309 ntBASIC6.21□□□□□ -1.42
CCDC42Q96M95 AL035422.1-201ENST00000414193 397 ntBASIC6.21□□□□□ -1.42
CCDC42Q96M95 LINC01114-201ENST00000421071 482 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC42Q96M95 AC019205.1-201ENST00000421830 730 ntBASIC6.21□□□□□ -1.42
CCDC42Q96M95 RPS27AP6-201ENST00000427962 448 ntBASIC6.21□□□□□ -1.42
CCDC42Q96M95 NPM1P18-201ENST00000434232 732 ntBASIC6.21□□□□□ -1.42
CCDC42Q96M95 LINC00867-203ENST00000445161 580 ntTSL 2 BASIC6.21□□□□□ -1.42
CCDC42Q96M95 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC6.21□□□□□ -1.42
CCDC42Q96M95 AC044784.1-201ENST00000456526 677 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC42Q96M95 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC6.21□□□□□ -1.42
CCDC42Q96M95 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC42Q96M95 AC099521.1-201ENST00000482557 334 ntBASIC6.21□□□□□ -1.42
CCDC42Q96M95 RPS7P6-201ENST00000485777 579 ntBASIC6.21□□□□□ -1.42
CCDC42Q96M95 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC6.21□□□□□ -1.42
CCDC42Q96M95 RPS27P20-201ENST00000492051 246 ntBASIC6.21□□□□□ -1.42
CCDC42Q96M95 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC42Q96M95 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC6.21□□□□□ -1.42
CCDC42Q96M95 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC42Q96M95 AC096576.2-201ENST00000511835 948 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC42Q96M95 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC6.21□□□□□ -1.42
CCDC42Q96M95 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC6.21□□□□□ -1.42
CCDC42Q96M95 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC6.21□□□□□ -1.42
CCDC42Q96M95 TEX41-279ENST00000629149 609 ntTSL 5 BASIC6.21□□□□□ -1.42
CCDC42Q96M95 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC42Q96M95 AC007603.3-201ENST00000636915 979 ntBASIC6.21□□□□□ -1.42
CCDC42Q96M95 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC42Q96M95 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
CCDC42Q96M95 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
CCDC42Q96M95 BMP10-201ENST00000295379 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC42Q96M95 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms