Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.97□□□□□ -1.45
VPS39Q96JC1 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC5.97□□□□□ -1.45
VPS39Q96JC1 AC002553.3-201ENST00000453002 341 ntBASIC5.97□□□□□ -1.45
VPS39Q96JC1 AC239798.3-201ENST00000454459 408 ntBASIC5.97□□□□□ -1.45
VPS39Q96JC1 RN7SL552P-201ENST00000462094 276 ntBASIC5.97□□□□□ -1.45
VPS39Q96JC1 AC093719.1-201ENST00000480427 441 ntBASIC5.97□□□□□ -1.45
VPS39Q96JC1 RPL12P30-201ENST00000488389 499 ntBASIC5.97□□□□□ -1.45
VPS39Q96JC1 AP002453.1-201ENST00000492327 668 ntBASIC5.97□□□□□ -1.45
VPS39Q96JC1 DUBR-205ENST00000495228 411 ntTSL 2 BASIC5.97□□□□□ -1.45
VPS39Q96JC1 HMGN1P16-201ENST00000508308 283 ntBASIC5.97□□□□□ -1.45
VPS39Q96JC1 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC5.97□□□□□ -1.45
VPS39Q96JC1 AC130365.2-201ENST00000525882 1201 ntBASIC5.97□□□□□ -1.45
VPS39Q96JC1 AC234775.3-201ENST00000564612 656 ntBASIC5.97□□□□□ -1.45
VPS39Q96JC1 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC5.97□□□□□ -1.45
VPS39Q96JC1 AC091769.2-201ENST00000605385 479 ntTSL 4 BASIC5.97□□□□□ -1.45
VPS39Q96JC1 AL645933.2-201ENST00000606743 1207 ntBASIC5.97□□□□□ -1.45
VPS39Q96JC1 AC093388.1-201ENST00000609166 430 ntBASIC5.97□□□□□ -1.45
VPS39Q96JC1 AC015819.1-201ENST00000613588 663 ntBASIC5.97□□□□□ -1.45
VPS39Q96JC1 MIR6813-201ENST00000621638 56 ntBASIC5.97□□□□□ -1.45
VPS39Q96JC1 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC5.97□□□□□ -1.45
VPS39Q96JC1 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC5.97□□□□□ -1.45
VPS39Q96JC1 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.45
VPS39Q96JC1 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.97□□□□□ -1.45
VPS39Q96JC1 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.97□□□□□ -1.45
VPS39Q96JC1 CAP1P2-201ENST00000417455 1409 ntBASIC5.97□□□□□ -1.45
VPS39Q96JC1 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
VPS39Q96JC1 ALB-214ENST00000509063 1911 ntTSL 5 BASIC5.97□□□□□ -1.45
VPS39Q96JC1 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
VPS39Q96JC1 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.97□□□□□ -1.45
VPS39Q96JC1 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.45
VPS39Q96JC1 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
VPS39Q96JC1 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
VPS39Q96JC1 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
VPS39Q96JC1 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
VPS39Q96JC1 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC5.96□□□□□ -1.45
VPS39Q96JC1 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC5.96□□□□□ -1.45
VPS39Q96JC1 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.96□□□□□ -1.45
VPS39Q96JC1 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC5.96□□□□□ -1.45
VPS39Q96JC1 CUL4AP1-201ENST00000514750 1863 ntBASIC5.96□□□□□ -1.45
VPS39Q96JC1 AC005261.6-201ENST00000623072 1387 ntBASIC5.96□□□□□ -1.45
VPS39Q96JC1 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
VPS39Q96JC1 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC5.96□□□□□ -1.46
VPS39Q96JC1 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC5.96□□□□□ -1.46
VPS39Q96JC1 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.96□□□□□ -1.46
VPS39Q96JC1 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.96□□□□□ -1.46
VPS39Q96JC1 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
VPS39Q96JC1 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
VPS39Q96JC1 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
VPS39Q96JC1 SNORA21-201ENST00000362423 132 ntBASIC5.96□□□□□ -1.46
VPS39Q96JC1 RNA5SP211-201ENST00000365516 117 ntBASIC5.96□□□□□ -1.46
VPS39Q96JC1 GNAT3-201ENST00000398291 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
VPS39Q96JC1 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC5.96□□□□□ -1.46
VPS39Q96JC1 PTP4A1P1-201ENST00000420539 515 ntBASIC5.96□□□□□ -1.46
VPS39Q96JC1 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC5.96□□□□□ -1.46
VPS39Q96JC1 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
VPS39Q96JC1 LINC00328-2P-201ENST00000436585 219 ntBASIC5.96□□□□□ -1.46
VPS39Q96JC1 TRGC2-201ENST00000436911 1013 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
VPS39Q96JC1 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC5.96□□□□□ -1.46
VPS39Q96JC1 OSTCP1-201ENST00000455507 450 ntBASIC5.96□□□□□ -1.46
VPS39Q96JC1 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC5.96□□□□□ -1.46
VPS39Q96JC1 AC104164.1-201ENST00000460282 590 ntBASIC5.96□□□□□ -1.46
VPS39Q96JC1 OR7E22P-201ENST00000478335 1035 ntBASIC5.96□□□□□ -1.46
VPS39Q96JC1 AC016687.1-201ENST00000482574 353 ntBASIC5.96□□□□□ -1.46
VPS39Q96JC1 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.46
VPS39Q96JC1 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC5.96□□□□□ -1.46
VPS39Q96JC1 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
VPS39Q96JC1 ST13P12-201ENST00000508958 1094 ntBASIC5.96□□□□□ -1.46
VPS39Q96JC1 AC108103.1-201ENST00000511286 446 ntBASIC5.96□□□□□ -1.46
VPS39Q96JC1 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
VPS39Q96JC1 OR4A42P-201ENST00000531397 938 ntBASIC5.96□□□□□ -1.46
VPS39Q96JC1 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC5.96□□□□□ -1.46
VPS39Q96JC1 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC5.96□□□□□ -1.46
VPS39Q96JC1 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC5.96□□□□□ -1.46
VPS39Q96JC1 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
VPS39Q96JC1 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC5.96□□□□□ -1.46
VPS39Q96JC1 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.96□□□□□ -1.46
VPS39Q96JC1 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC5.96□□□□□ -1.46
VPS39Q96JC1 SMIM12P1-201ENST00000603004 274 ntBASIC5.96□□□□□ -1.46
VPS39Q96JC1 AL080312.2-201ENST00000613001 630 ntBASIC5.96□□□□□ -1.46
VPS39Q96JC1 AC012676.3-201ENST00000614983 479 ntBASIC5.96□□□□□ -1.46
VPS39Q96JC1 RFPL4AP6-201ENST00000616792 846 ntBASIC5.96□□□□□ -1.46
VPS39Q96JC1 MIR6823-201ENST00000622118 61 ntBASIC5.96□□□□□ -1.46
VPS39Q96JC1 AC099654.15-201ENST00000639802 509 ntBASIC5.96□□□□□ -1.46
VPS39Q96JC1 AC026523.2-201ENST00000625039 7739 ntBASIC5.96□□□□□ -1.46
VPS39Q96JC1 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.46
VPS39Q96JC1 AC092070.2-203ENST00000598377 3644 ntBASIC5.96□□□□□ -1.46
VPS39Q96JC1 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC5.96□□□□□ -1.46
VPS39Q96JC1 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC5.96□□□□□ -1.46
VPS39Q96JC1 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.96□□□□□ -1.46
VPS39Q96JC1 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.96□□□□□ -1.46
VPS39Q96JC1 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
VPS39Q96JC1 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
VPS39Q96JC1 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.96□□□□□ -1.46
VPS39Q96JC1 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
VPS39Q96JC1 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
VPS39Q96JC1 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
VPS39Q96JC1 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
VPS39Q96JC1 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
VPS39Q96JC1 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
VPS39Q96JC1 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms