Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 CT45A5-201ENST00000487941 1161 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 RN7SL104P-201ENST00000498686 293 ntBASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 AC026782.2-201ENST00000510845 636 ntBASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 RN7SKP157-201ENST00000516174 282 ntBASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 ZFAND1-204ENST00000517588 633 ntTSL 2 BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 AC136777.2-201ENST00000522979 358 ntBASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 RN7SL66P-201ENST00000582099 264 ntBASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 AC025857.2-201ENST00000602711 238 ntBASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 AC012368.3-201ENST00000604190 219 ntBASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 AC017076.1-201ENST00000607613 578 ntBASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
CLIP4Q8N3C7 AL591135.1-201ENST00000401578 5914 ntBASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 RNU6-819P-201ENST00000364116 107 ntBASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 AL365220.1-201ENST00000432923 399 ntBASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 UBQLN1P1-207ENST00000441056 1169 ntBASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 AC234771.2-201ENST00000445718 597 ntBASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 RN7SL393P-201ENST00000463588 296 ntBASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 AC018635.1-201ENST00000468292 1030 ntBASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 AC131094.1-201ENST00000506984 490 ntTSL 2 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 CYP4F27P-201ENST00000514557 494 ntBASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 SNORA70.17-201ENST00000516449 133 ntBASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 EIF4A2P3-201ENST00000525903 1055 ntBASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 AL157871.4-201ENST00000557226 385 ntTSL 2 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 AC092376.1-201ENST00000569677 335 ntTSL 2 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 AC019322.1-201ENST00000571869 389 ntBASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 MIR3157-201ENST00000578688 85 ntBASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 AC004890.3-201ENST00000605566 1095 ntBASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 AL512506.1-201ENST00000613918 449 ntBASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 MIR6774-201ENST00000614651 70 ntBASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 AL122023.1-201ENST00000622847 530 ntBASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 AC126755.2-201ENST00000545114 1522 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 AC068446.1-201ENST00000556425 1549 ntBASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 PPBPP2-201ENST00000513150 1362 ntBASIC5.67□□□□□ -1.5
CLIP4Q8N3C7 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 AC018717.1-201ENST00000457712 1505 ntBASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 GTF3AP1-201ENST00000416942 1004 ntBASIC5.66□□□□□ -1.5
CLIP4Q8N3C7 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms