Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.32□□□□□ -1.56
SKA3Q8IX90 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SKA3Q8IX90 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SKA3Q8IX90 AC016583.1-201ENST00000624221 2431 ntBASIC5.32□□□□□ -1.56
SKA3Q8IX90 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SKA3Q8IX90 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SKA3Q8IX90 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.31□□□□□ -1.56
SKA3Q8IX90 RBMY1HP-201ENST00000382759 1389 ntBASIC5.31□□□□□ -1.56
SKA3Q8IX90 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC5.31□□□□□ -1.56
SKA3Q8IX90 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SKA3Q8IX90 AC123912.3-201ENST00000600907 1367 ntBASIC5.31□□□□□ -1.56
SKA3Q8IX90 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SKA3Q8IX90 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.31□□□□□ -1.56
SKA3Q8IX90 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
SKA3Q8IX90 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC5.31□□□□□ -1.56
SKA3Q8IX90 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
SKA3Q8IX90 OR51J1-201ENST00000332043 951 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
SKA3Q8IX90 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
SKA3Q8IX90 AC017078.1-201ENST00000416146 368 ntBASIC5.31□□□□□ -1.56
SKA3Q8IX90 AC015977.1-201ENST00000418887 292 ntBASIC5.31□□□□□ -1.56
SKA3Q8IX90 LINC01114-201ENST00000421071 482 ntTSL 3 BASIC5.31□□□□□ -1.56
SKA3Q8IX90 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC5.31□□□□□ -1.56
SKA3Q8IX90 AC007283.1-201ENST00000434645 445 ntTSL 5 BASIC5.31□□□□□ -1.56
SKA3Q8IX90 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC5.31□□□□□ -1.56
SKA3Q8IX90 PPIA-203ENST00000451562 544 ntTSL 2 BASIC5.31□□□□□ -1.56
SKA3Q8IX90 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC5.31□□□□□ -1.56
SKA3Q8IX90 AC093719.1-201ENST00000480427 441 ntBASIC5.31□□□□□ -1.56
SKA3Q8IX90 AC124945.1-201ENST00000485133 188 ntBASIC5.31□□□□□ -1.56
SKA3Q8IX90 RPL23AP40-201ENST00000487630 390 ntBASIC5.31□□□□□ -1.56
SKA3Q8IX90 AC239584.1-201ENST00000510419 732 ntTSL 5 BASIC5.31□□□□□ -1.56
SKA3Q8IX90 RNA5SP473-201ENST00000516402 125 ntBASIC5.31□□□□□ -1.56
SKA3Q8IX90 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SKA3Q8IX90 OR56A7P-201ENST00000524865 941 ntBASIC5.31□□□□□ -1.56
SKA3Q8IX90 GTF2IP11-201ENST00000526931 420 ntBASIC5.31□□□□□ -1.56
SKA3Q8IX90 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC5.31□□□□□ -1.56
SKA3Q8IX90 BCAS2P1-201ENST00000528022 632 ntBASIC5.31□□□□□ -1.56
SKA3Q8IX90 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC5.31□□□□□ -1.56
SKA3Q8IX90 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC5.31□□□□□ -1.56
SKA3Q8IX90 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC5.31□□□□□ -1.56
SKA3Q8IX90 AC092332.1-201ENST00000563684 829 ntBASIC5.31□□□□□ -1.56
SKA3Q8IX90 AC010401.2-202ENST00000570663 396 ntTSL 2 BASIC5.31□□□□□ -1.56
SKA3Q8IX90 STARD6-202ENST00000577499 696 ntTSL 2 BASIC5.31□□□□□ -1.56
SKA3Q8IX90 MIR132-201ENST00000591554 101 ntBASIC5.31□□□□□ -1.56
SKA3Q8IX90 TEX41-218ENST00000596540 882 ntTSL 5 BASIC5.31□□□□□ -1.56
SKA3Q8IX90 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC5.31□□□□□ -1.56
SKA3Q8IX90 AL357562.1-201ENST00000624911 609 ntBASIC5.31□□□□□ -1.56
SKA3Q8IX90 AP001052.1-201ENST00000626421 99 ntBASIC5.31□□□□□ -1.56
SKA3Q8IX90 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.31□□□□□ -1.56
SKA3Q8IX90 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
SKA3Q8IX90 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
SKA3Q8IX90 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SKA3Q8IX90 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SKA3Q8IX90 AC104966.1-201ENST00000467010 1464 ntBASIC5.31□□□□□ -1.56
SKA3Q8IX90 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SKA3Q8IX90 OFD1P8Y-201ENST00000449148 1433 ntBASIC5.31□□□□□ -1.56
SKA3Q8IX90 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.31□□□□□ -1.56
SKA3Q8IX90 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SKA3Q8IX90 ADAM24P-201ENST00000398655 2101 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 AL354854.1-201ENST00000455940 1363 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SKA3Q8IX90 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
SKA3Q8IX90 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC5.3□□□□□ -1.56
SKA3Q8IX90 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC5.3□□□□□ -1.56
SKA3Q8IX90 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.3□□□□□ -1.56
SKA3Q8IX90 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
SKA3Q8IX90 MTCO1P28-201ENST00000574177 1528 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 OR10R3P-201ENST00000361688 942 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
SKA3Q8IX90 SNORA5.1-201ENST00000384275 131 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 SNORA51.9-201ENST00000384295 124 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
SKA3Q8IX90 RNA5SP431-201ENST00000410312 120 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 AC245096.1-201ENST00000413104 546 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC5.3□□□□□ -1.56
SKA3Q8IX90 FTO-202ENST00000431610 707 ntTSL 3 BASIC5.3□□□□□ -1.56
SKA3Q8IX90 GAPDHP75-201ENST00000433910 943 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 SUMO2P8-201ENST00000434672 286 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 AL731534.1-201ENST00000434711 269 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 PNKDP1-201ENST00000435914 430 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 AL136455.1-201ENST00000441083 1240 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 TRIM60P16-201ENST00000444048 694 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 AC097463.1-201ENST00000447288 481 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC5.3□□□□□ -1.56
SKA3Q8IX90 AC016027.4-201ENST00000450866 277 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 AL445687.2-201ENST00000458156 728 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 AL035690.1-201ENST00000490892 383 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 RN7SL649P-201ENST00000496974 275 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 CCDC11P1-201ENST00000503137 1162 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 MORF4L2P1-201ENST00000503761 858 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 AL158068.1-201ENST00000506116 616 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC5.3□□□□□ -1.56
SKA3Q8IX90 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC5.3□□□□□ -1.56
SKA3Q8IX90 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC5.3□□□□□ -1.56
SKA3Q8IX90 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
SKA3Q8IX90 AC011853.1-201ENST00000518911 454 ntBASIC5.3□□□□□ -1.56
SKA3Q8IX90 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC5.3□□□□□ -1.56
SKA3Q8IX90 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC5.3□□□□□ -1.56
SKA3Q8IX90 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC5.3□□□□□ -1.56
SKA3Q8IX90 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms