Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
LIG3P49916 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
LIG3P49916 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC7.32□□□□□ -1.24
LIG3P49916 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC7.32□□□□□ -1.24
LIG3P49916 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC7.32□□□□□ -1.24
LIG3P49916 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC7.32□□□□□ -1.24
LIG3P49916 GALNTL5-206ENST00000431418 1678 ntAPPRIS P1 TSL 5 BASIC7.32□□□□□ -1.24
LIG3P49916 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC7.32□□□□□ -1.24
LIG3P49916 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC7.31□□□□□ -1.24
LIG3P49916 AL353743.3-201ENST00000442109 1468 ntBASIC7.31□□□□□ -1.24
LIG3P49916 ZNF519-207ENST00000590202 2830 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
LIG3P49916 ZNF107-206ENST00000620827 5685 ntAPPRIS P4 TSL 4 BASIC7.31□□□□□ -1.24
LIG3P49916 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
LIG3P49916 FAM205C-201ENST00000340783 983 ntAPPRIS ALT2 TSL 4 BASIC7.31□□□□□ -1.24
LIG3P49916 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC7.31□□□□□ -1.24
LIG3P49916 RN7SKP174-201ENST00000363803 330 ntBASIC7.31□□□□□ -1.24
LIG3P49916 CASP10-206ENST00000374650 1126 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
LIG3P49916 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC7.31□□□□□ -1.24
LIG3P49916 HNRNPH1P2-201ENST00000396845 1210 ntBASIC7.31□□□□□ -1.24
LIG3P49916 AL021407.1-201ENST00000404531 386 ntBASIC7.31□□□□□ -1.24
LIG3P49916 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC7.31□□□□□ -1.24
LIG3P49916 AL713923.1-201ENST00000414071 378 ntTSL 5 BASIC7.31□□□□□ -1.24
LIG3P49916 ELMO1-AS1-201ENST00000419535 528 ntTSL 4 BASIC7.31□□□□□ -1.24
LIG3P49916 AL593856.1-201ENST00000419949 805 ntBASIC7.31□□□□□ -1.24
LIG3P49916 AL158070.1-201ENST00000421614 631 ntTSL 2 BASIC7.31□□□□□ -1.24
LIG3P49916 AC246680.2-201ENST00000422106 389 ntBASIC7.31□□□□□ -1.24
LIG3P49916 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
LIG3P49916 LINC01728-201ENST00000428529 524 ntTSL 2 BASIC7.31□□□□□ -1.24
LIG3P49916 AL669831.5-205ENST00000429505 441 ntTSL 3 BASIC7.31□□□□□ -1.24
LIG3P49916 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC7.31□□□□□ -1.24
LIG3P49916 OSTN-AS1-201ENST00000430375 515 ntTSL 5 BASIC7.31□□□□□ -1.24
LIG3P49916 MTCO2P16-201ENST00000436962 677 ntBASIC7.31□□□□□ -1.24
LIG3P49916 AC012485.2-201ENST00000437372 982 ntTSL 5 BASIC7.31□□□□□ -1.24
LIG3P49916 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC7.31□□□□□ -1.24
LIG3P49916 NPM1P23-201ENST00000440193 849 ntBASIC7.31□□□□□ -1.24
LIG3P49916 AC007327.1-201ENST00000447461 264 ntBASIC7.31□□□□□ -1.24
LIG3P49916 EEF1A1P28-201ENST00000450915 1403 ntBASIC7.31□□□□□ -1.24
LIG3P49916 MIR4422HG-201ENST00000451250 638 ntTSL 3 BASIC7.31□□□□□ -1.24
LIG3P49916 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC7.31□□□□□ -1.24
LIG3P49916 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC7.31□□□□□ -1.24
LIG3P49916 LINC00533-201ENST00000456103 537 ntTSL 3 BASIC7.31□□□□□ -1.24
LIG3P49916 AC040975.1-201ENST00000472104 316 ntBASIC7.31□□□□□ -1.24
LIG3P49916 BZW1P2-201ENST00000473537 826 ntBASIC7.31□□□□□ -1.24
LIG3P49916 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC7.31□□□□□ -1.24
LIG3P49916 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
LIG3P49916 NAA50-206ENST00000493454 964 ntTSL 2 BASIC7.31□□□□□ -1.24
LIG3P49916 RPL12P7-201ENST00000493832 494 ntBASIC7.31□□□□□ -1.24
LIG3P49916 ATG12-202ENST00000500945 1430 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
LIG3P49916 AC021151.1-201ENST00000506933 183 ntTSL 3 BASIC7.31□□□□□ -1.24
LIG3P49916 UGT2A3P7-201ENST00000510485 734 ntBASIC7.31□□□□□ -1.24
LIG3P49916 AC027801.3-201ENST00000515049 698 ntBASIC7.31□□□□□ -1.24
LIG3P49916 C1GALT1P3-201ENST00000522049 819 ntBASIC7.31□□□□□ -1.24
LIG3P49916 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC7.31□□□□□ -1.24
LIG3P49916 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC7.31□□□□□ -1.24
LIG3P49916 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC7.31□□□□□ -1.24
LIG3P49916 ZMYND11-215ENST00000558098 1859 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
LIG3P49916 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC7.31□□□□□ -1.24
LIG3P49916 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC7.31□□□□□ -1.24
LIG3P49916 AC018521.2-202ENST00000582142 473 ntTSL 2 BASIC7.31□□□□□ -1.24
LIG3P49916 AC067852.5-201ENST00000589299 310 ntBASIC7.31□□□□□ -1.24
LIG3P49916 ZEB2-AS1-206ENST00000602006 572 ntTSL 5 BASIC7.31□□□□□ -1.24
LIG3P49916 FAM205C-203ENST00000603640 1017 ntAPPRIS P4 TSL 5 BASIC7.31□□□□□ -1.24
LIG3P49916 AC018618.2-201ENST00000604770 446 ntBASIC7.31□□□□□ -1.24
LIG3P49916 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC7.31□□□□□ -1.24
LIG3P49916 AC013468.1-201ENST00000608680 598 ntBASIC7.31□□□□□ -1.24
LIG3P49916 AC009163.6-201ENST00000612367 342 ntBASIC7.31□□□□□ -1.24
LIG3P49916 AC061709.1-202ENST00000615029 527 ntTSL 3 BASIC7.31□□□□□ -1.24
LIG3P49916 RDM1-219ENST00000615378 542 ntTSL 3 BASIC7.31□□□□□ -1.24
LIG3P49916 AC073569.3-201ENST00000619055 682 ntBASIC7.31□□□□□ -1.24
LIG3P49916 AC103564.3-201ENST00000621194 220 ntBASIC7.31□□□□□ -1.24
LIG3P49916 AC211433.3-201ENST00000623770 375 ntBASIC7.31□□□□□ -1.24
LIG3P49916 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC7.31□□□□□ -1.24
LIG3P49916 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
LIG3P49916 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
LIG3P49916 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
LIG3P49916 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
LIG3P49916 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC7.31□□□□□ -1.24
LIG3P49916 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
LIG3P49916 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC7.31□□□□□ -1.24
LIG3P49916 CLCA3P-203ENST00000490028 2781 ntBASIC7.31□□□□□ -1.24
LIG3P49916 AC093909.5-201ENST00000621839 1799 ntBASIC7.31□□□□□ -1.24
LIG3P49916 ZNF415-204ENST00000594011 2630 ntTSL 2 BASIC7.31□□□□□ -1.24
LIG3P49916 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC7.3□□□□□ -1.24
LIG3P49916 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC7.3□□□□□ -1.24
LIG3P49916 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC7.3□□□□□ -1.24
LIG3P49916 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC7.3□□□□□ -1.24
LIG3P49916 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
LIG3P49916 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
LIG3P49916 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
LIG3P49916 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC7.3□□□□□ -1.24
LIG3P49916 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
LIG3P49916 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC7.3□□□□□ -1.24
LIG3P49916 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC7.3□□□□□ -1.24
LIG3P49916 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
LIG3P49916 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
LIG3P49916 NACA3P-201ENST00000359690 648 ntBASIC7.3□□□□□ -1.24
LIG3P49916 RNU4-81P-201ENST00000363561 144 ntBASIC7.3□□□□□ -1.24
LIG3P49916 U3.14-201ENST00000365363 227 ntBASIC7.3□□□□□ -1.24
LIG3P49916 AC074375.1-201ENST00000372993 192 ntBASIC7.3□□□□□ -1.24
LIG3P49916 OR10A4-201ENST00000379829 995 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms