Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MAL2-207ENST00000522828 603 ntTSL 3 BASIC9.52□□□□□ -0.88
CUX1P39880 AC090458.1-203ENST00000527757 546 ntTSL 3 BASIC9.52□□□□□ -0.88
CUX1P39880 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC9.52□□□□□ -0.88
CUX1P39880 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC9.52□□□□□ -0.88
CUX1P39880 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC9.52□□□□□ -0.89
CUX1P39880 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
CUX1P39880 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC9.52□□□□□ -0.89
CUX1P39880 TMED8-201ENST00000216468 7784 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
CUX1P39880 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC9.52□□□□□ -0.89
CUX1P39880 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC9.52□□□□□ -0.89
CUX1P39880 NAT1-206ENST00000518029 2162 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
CUX1P39880 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC9.52□□□□□ -0.89
CUX1P39880 KAT7-201ENST00000259021 9644 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
CUX1P39880 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC9.52□□□□□ -0.89
CUX1P39880 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC9.52□□□□□ -0.89
CUX1P39880 AL357153.1-201ENST00000500016 2941 ntTSL 2 BASIC9.52□□□□□ -0.89
CUX1P39880 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
CUX1P39880 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC9.51□□□□□ -0.89
CUX1P39880 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC9.51□□□□□ -0.89
CUX1P39880 AL645733.1-201ENST00000402250 217 ntBASIC9.51□□□□□ -0.89
CUX1P39880 Z80107.2-201ENST00000445127 392 ntBASIC9.51□□□□□ -0.89
CUX1P39880 MORF4L1P4-201ENST00000450245 976 ntBASIC9.51□□□□□ -0.89
CUX1P39880 RNA5SP228-201ENST00000516232 133 ntBASIC9.51□□□□□ -0.89
CUX1P39880 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC9.51□□□□□ -0.89
CUX1P39880 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC9.51□□□□□ -0.89
CUX1P39880 DPPA3P2-202ENST00000557188 1219 ntBASIC9.51□□□□□ -0.89
CUX1P39880 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC9.51□□□□□ -0.89
CUX1P39880 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
CUX1P39880 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC9.51□□□□□ -0.89
CUX1P39880 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC9.51□□□□□ -0.89
CUX1P39880 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
CUX1P39880 DSCAM-203ENST00000617870 6176 ntTSL 5 BASIC9.51□□□□□ -0.89
CUX1P39880 RPL14-201ENST00000338970 7072 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
CUX1P39880 ZSCAN12-201ENST00000361028 5495 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
CUX1P39880 MIER3-205ENST00000409421 2152 ntTSL 2 BASIC9.51□□□□□ -0.89
CUX1P39880 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
CUX1P39880 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC9.51□□□□□ -0.89
CUX1P39880 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC9.51□□□□□ -0.89
CUX1P39880 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC9.51□□□□□ -0.89
CUX1P39880 ACSL5-203ENST00000356116 3353 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
CUX1P39880 AC112255.1-201ENST00000624070 2493 ntBASIC9.51□□□□□ -0.89
CUX1P39880 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
CUX1P39880 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC9.51□□□□□ -0.89
CUX1P39880 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC9.51□□□□□ -0.89
CUX1P39880 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC9.51□□□□□ -0.89
CUX1P39880 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC9.51□□□□□ -0.89
CUX1P39880 PARN-201ENST00000341484 2100 ntTSL 2 BASIC9.51□□□□□ -0.89
CUX1P39880 DUTP5-201ENST00000406790 469 ntBASIC9.51□□□□□ -0.89
CUX1P39880 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC9.51□□□□□ -0.89
CUX1P39880 AC073850.1-201ENST00000449243 255 ntBASIC9.51□□□□□ -0.89
CUX1P39880 EIF4EBP2P1-201ENST00000450009 343 ntBASIC9.51□□□□□ -0.89
CUX1P39880 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC9.51□□□□□ -0.89
CUX1P39880 AC015864.1-201ENST00000496512 544 ntBASIC9.51□□□□□ -0.89
CUX1P39880 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC9.51□□□□□ -0.89
CUX1P39880 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
CUX1P39880 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC9.51□□□□□ -0.89
CUX1P39880 AC005224.3-201ENST00000584683 2140 ntBASIC9.51□□□□□ -0.89
CUX1P39880 NEK11-201ENST00000356918 1874 ntAPPRIS ALT2 TSL 5 BASIC9.51□□□□□ -0.89
CUX1P39880 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC9.51□□□□□ -0.89
CUX1P39880 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
CUX1P39880 AC092821.2-201ENST00000545710 2042 ntBASIC9.5□□□□□ -0.89
CUX1P39880 ITPR1-203ENST00000357086 9762 ntAPPRIS P3 TSL 1 (best) BASIC9.5□□□□□ -0.89
CUX1P39880 AC018809.2-201ENST00000602436 3823 ntBASIC9.5□□□□□ -0.89
CUX1P39880 REV3L-203ENST00000368805 10461 ntAPPRIS P1 TSL 5 BASIC9.5□□□□□ -0.89
CUX1P39880 ZNF43-205ENST00000594012 5584 ntAPPRIS ALT2 TSL 2 BASIC9.5□□□□□ -0.89
CUX1P39880 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC9.5□□□□□ -0.89
CUX1P39880 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC9.5□□□□□ -0.89
CUX1P39880 MRAP-202ENST00000339944 440 ntAPPRIS ALT2 TSL 1 (best) BASIC9.5□□□□□ -0.89
CUX1P39880 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC9.5□□□□□ -0.89
CUX1P39880 RN7SKP104-201ENST00000362605 328 ntBASIC9.5□□□□□ -0.89
CUX1P39880 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC9.5□□□□□ -0.89
CUX1P39880 DSTNP5-201ENST00000427921 523 ntBASIC9.5□□□□□ -0.89
CUX1P39880 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC9.5□□□□□ -0.89
CUX1P39880 PA2G4P6-201ENST00000438325 1197 ntBASIC9.5□□□□□ -0.89
CUX1P39880 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC9.5□□□□□ -0.89
CUX1P39880 PFDN1-207ENST00000524074 395 ntTSL 5 BASIC9.5□□□□□ -0.89
CUX1P39880 AC078878.1-201ENST00000539832 958 ntBASIC9.5□□□□□ -0.89
CUX1P39880 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC9.5□□□□□ -0.89
CUX1P39880 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC9.5□□□□□ -0.89
CUX1P39880 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC9.5□□□□□ -0.89
CUX1P39880 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC9.5□□□□□ -0.89
CUX1P39880 AC109583.2-201ENST00000617367 129 ntBASIC9.5□□□□□ -0.89
CUX1P39880 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC9.5□□□□□ -0.89
CUX1P39880 ANKFY1-201ENST00000341657 7418 ntAPPRIS ALT1 TSL 5 BASIC9.5□□□□□ -0.89
CUX1P39880 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC9.5□□□□□ -0.89
CUX1P39880 ABCA11P-202ENST00000504019 2110 ntBASIC9.5□□□□□ -0.89
CUX1P39880 AP000866.6-201ENST00000638898 3579 ntBASIC9.49□□□□□ -0.89
CUX1P39880 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
CUX1P39880 ZNF23-204ENST00000428724 1932 ntAPPRIS P3 TSL 1 (best) BASIC9.49□□□□□ -0.89
CUX1P39880 CCDC125-201ENST00000383374 2006 ntTSL 5 BASIC9.49□□□□□ -0.89
CUX1P39880 CAPS2-205ENST00000409445 2135 ntTSL 2 BASIC9.49□□□□□ -0.89
CUX1P39880 AL359922.2-201ENST00000581788 3017 ntBASIC9.49□□□□□ -0.89
CUX1P39880 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC9.49□□□□□ -0.89
CUX1P39880 NHLRC2-201ENST00000369301 11051 ntAPPRIS P1 TSL 2 BASIC9.49□□□□□ -0.89
CUX1P39880 AL133325.1-201ENST00000421090 382 ntBASIC9.49□□□□□ -0.89
CUX1P39880 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC9.49□□□□□ -0.89
CUX1P39880 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC9.49□□□□□ -0.89
CUX1P39880 RNU6-941P-201ENST00000516346 108 ntBASIC9.49□□□□□ -0.89
CUX1P39880 AC139697.1-201ENST00000548429 745 ntBASIC9.49□□□□□ -0.89
CUX1P39880 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC9.49□□□□□ -0.89
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms