Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 PROX1-203ENST00000435016 3075 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
HOXC9P31274 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
HOXC9P31274 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC7.67□□□□□ -1.18
HOXC9P31274 SOX9-AS1-202ENST00000414600 742 ntTSL 3 BASIC7.67□□□□□ -1.18
HOXC9P31274 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC7.67□□□□□ -1.18
HOXC9P31274 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC7.67□□□□□ -1.18
HOXC9P31274 AK3P5-201ENST00000432033 519 ntBASIC7.67□□□□□ -1.18
HOXC9P31274 RN7SL583P-201ENST00000475692 287 ntBASIC7.67□□□□□ -1.18
HOXC9P31274 AC008953.1-201ENST00000497334 318 ntBASIC7.67□□□□□ -1.18
HOXC9P31274 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC7.67□□□□□ -1.18
HOXC9P31274 MRPS21P7-201ENST00000566937 238 ntBASIC7.67□□□□□ -1.18
HOXC9P31274 RBM22P12-201ENST00000567098 1255 ntBASIC7.67□□□□□ -1.18
HOXC9P31274 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC7.67□□□□□ -1.18
HOXC9P31274 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC7.67□□□□□ -1.18
HOXC9P31274 AC008655.2-201ENST00000597049 304 ntTSL 4 BASIC7.67□□□□□ -1.18
HOXC9P31274 BNIP3P32-201ENST00000600015 554 ntBASIC7.67□□□□□ -1.18
HOXC9P31274 CASC19-264ENST00000641912 1184 ntBASIC7.67□□□□□ -1.18
HOXC9P31274 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC7.67□□□□□ -1.18
HOXC9P31274 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC7.67□□□□□ -1.18
HOXC9P31274 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
HOXC9P31274 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC7.67□□□□□ -1.18
HOXC9P31274 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
HOXC9P31274 AL512634.1-201ENST00000566873 2432 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
HOXC9P31274 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
HOXC9P31274 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC7.66□□□□□ -1.18
HOXC9P31274 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
HOXC9P31274 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC7.66□□□□□ -1.18
HOXC9P31274 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC7.66□□□□□ -1.18
HOXC9P31274 SLC8A1-204ENST00000405269 2965 ntTSL 5 BASIC7.66□□□□□ -1.18
HOXC9P31274 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC7.66□□□□□ -1.18
HOXC9P31274 DNAH17-202ENST00000585328 13708 ntAPPRIS ALT2 TSL 5 BASIC7.66□□□□□ -1.18
HOXC9P31274 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC7.66□□□□□ -1.18
HOXC9P31274 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC7.66□□□□□ -1.18
HOXC9P31274 BPHL-201ENST00000380368 797 ntTSL 5 BASIC7.66□□□□□ -1.18
HOXC9P31274 GAPDHP42-201ENST00000406848 981 ntBASIC7.66□□□□□ -1.18
HOXC9P31274 RNU4-34P-201ENST00000410431 124 ntBASIC7.66□□□□□ -1.18
HOXC9P31274 AP000534.2-201ENST00000412729 568 ntBASIC7.66□□□□□ -1.18
HOXC9P31274 OR7E116P-201ENST00000448529 957 ntBASIC7.66□□□□□ -1.18
HOXC9P31274 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC7.66□□□□□ -1.18
HOXC9P31274 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC7.66□□□□□ -1.18
HOXC9P31274 RPL32P9-201ENST00000487963 407 ntBASIC7.66□□□□□ -1.18
HOXC9P31274 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC7.66□□□□□ -1.18
HOXC9P31274 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC7.66□□□□□ -1.18
HOXC9P31274 AC024558.1-201ENST00000505008 528 ntBASIC7.66□□□□□ -1.18
HOXC9P31274 AC093763.2-201ENST00000505334 1223 ntBASIC7.66□□□□□ -1.18
HOXC9P31274 AC006499.3-201ENST00000506077 748 ntBASIC7.66□□□□□ -1.18
HOXC9P31274 RNA5SP92-201ENST00000516437 110 ntBASIC7.66□□□□□ -1.18
HOXC9P31274 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC7.66□□□□□ -1.18
HOXC9P31274 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC7.66□□□□□ -1.18
HOXC9P31274 AC021766.1-201ENST00000624404 741 ntBASIC7.66□□□□□ -1.18
HOXC9P31274 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC7.66□□□□□ -1.18
HOXC9P31274 METTL15-211ENST00000634762 718 ntTSL 5 BASIC7.66□□□□□ -1.18
HOXC9P31274 EEF1A1P30-201ENST00000429708 1315 ntBASIC7.66□□□□□ -1.18
HOXC9P31274 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC7.66□□□□□ -1.18
HOXC9P31274 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
HOXC9P31274 MAML2-202ENST00000618849 3154 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
HOXC9P31274 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC7.66□□□□□ -1.18
HOXC9P31274 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC7.66□□□□□ -1.18
HOXC9P31274 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC7.66□□□□□ -1.18
HOXC9P31274 AC006511.3-201ENST00000624929 1783 ntBASIC7.66□□□□□ -1.18
HOXC9P31274 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC7.66□□□□□ -1.18
HOXC9P31274 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
HOXC9P31274 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC7.66□□□□□ -1.18
HOXC9P31274 AC011504.1-201ENST00000623331 4103 ntBASIC7.66□□□□□ -1.18
HOXC9P31274 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC7.66□□□□□ -1.18
HOXC9P31274 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
HOXC9P31274 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
HOXC9P31274 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
HOXC9P31274 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
HOXC9P31274 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC7.65□□□□□ -1.18
HOXC9P31274 RNA5SP183-201ENST00000362452 119 ntBASIC7.65□□□□□ -1.18
HOXC9P31274 RNU1-19P-201ENST00000363306 165 ntBASIC7.65□□□□□ -1.18
HOXC9P31274 AP003170.5-201ENST00000397185 335 ntBASIC7.65□□□□□ -1.18
HOXC9P31274 AC009804.1-201ENST00000400949 179 ntBASIC7.65□□□□□ -1.18
HOXC9P31274 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
HOXC9P31274 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC7.65□□□□□ -1.18
HOXC9P31274 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC7.65□□□□□ -1.18
HOXC9P31274 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC7.65□□□□□ -1.18
HOXC9P31274 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC7.65□□□□□ -1.18
HOXC9P31274 PTMAP6-201ENST00000439110 327 ntBASIC7.65□□□□□ -1.18
HOXC9P31274 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC7.65□□□□□ -1.18
HOXC9P31274 AL606490.1-201ENST00000452266 765 ntBASIC7.65□□□□□ -1.18
HOXC9P31274 MLIP-206ENST00000502396 3102 ntAPPRIS ALT2 TSL 2 BASIC7.65□□□□□ -1.18
HOXC9P31274 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC7.65□□□□□ -1.18
HOXC9P31274 AC074255.1-201ENST00000511259 501 ntBASIC7.65□□□□□ -1.18
HOXC9P31274 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC7.65□□□□□ -1.18
HOXC9P31274 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
HOXC9P31274 SCARNA9-201ENST00000530422 353 ntBASIC7.65□□□□□ -1.18
HOXC9P31274 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC7.65□□□□□ -1.18
HOXC9P31274 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
HOXC9P31274 AL049779.3-201ENST00000557141 606 ntBASIC7.65□□□□□ -1.18
HOXC9P31274 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
HOXC9P31274 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
HOXC9P31274 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC7.65□□□□□ -1.18
HOXC9P31274 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC7.65□□□□□ -1.18
HOXC9P31274 PPATP2-201ENST00000605635 508 ntBASIC7.65□□□□□ -1.18
HOXC9P31274 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
HOXC9P31274 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC7.65□□□□□ -1.19
HOXC9P31274 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC7.65□□□□□ -1.19
HOXC9P31274 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC7.65□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms