Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC7.11□□□□□ -1.27
COL5A3P25940 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC7.11□□□□□ -1.27
COL5A3P25940 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC7.11□□□□□ -1.27
COL5A3P25940 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL5A3P25940 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL5A3P25940 COL21A1-203ENST00000370819 4094 ntAPPRIS ALT1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL5A3P25940 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL5A3P25940 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL5A3P25940 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC7.1□□□□□ -1.27
COL5A3P25940 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL5A3P25940 RNU1-149P-201ENST00000390870 161 ntBASIC7.1□□□□□ -1.27
COL5A3P25940 AL133325.1-201ENST00000421090 382 ntBASIC7.1□□□□□ -1.27
COL5A3P25940 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC7.1□□□□□ -1.27
COL5A3P25940 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC7.1□□□□□ -1.27
COL5A3P25940 PA2G4P6-201ENST00000438325 1197 ntBASIC7.1□□□□□ -1.27
COL5A3P25940 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL5A3P25940 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC7.1□□□□□ -1.27
COL5A3P25940 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC7.1□□□□□ -1.27
COL5A3P25940 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC7.1□□□□□ -1.27
COL5A3P25940 AP002799.1-201ENST00000623552 423 ntBASIC7.1□□□□□ -1.27
COL5A3P25940 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL5A3P25940 AC023154.1-201ENST00000510351 2517 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL5A3P25940 KIF6-202ENST00000287152 9082 ntAPPRIS P1 TSL 2 BASIC7.1□□□□□ -1.27
COL5A3P25940 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
COL5A3P25940 HMGB1-203ENST00000341423 5485 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL5A3P25940 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
COL5A3P25940 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL5A3P25940 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL5A3P25940 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC7.1□□□□□ -1.27
COL5A3P25940 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC7.1□□□□□ -1.27
COL5A3P25940 CLCN3-209ENST00000513761 6692 ntAPPRIS ALT1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL5A3P25940 GSTCD-201ENST00000360505 2154 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL5A3P25940 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
COL5A3P25940 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC7.1□□□□□ -1.27
COL5A3P25940 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC7.1□□□□□ -1.27
COL5A3P25940 AL662795.2-201ENST00000624252 3706 ntBASIC7.1□□□□□ -1.27
COL5A3P25940 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL5A3P25940 OR4K12P-201ENST00000406538 961 ntBASIC7.1□□□□□ -1.27
COL5A3P25940 RN7SKP151-201ENST00000410230 316 ntBASIC7.1□□□□□ -1.27
COL5A3P25940 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL5A3P25940 AK3P5-201ENST00000432033 519 ntBASIC7.1□□□□□ -1.27
COL5A3P25940 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL5A3P25940 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC7.1□□□□□ -1.27
COL5A3P25940 AC105399.1-202ENST00000447303 205 ntBASIC7.1□□□□□ -1.27
COL5A3P25940 CT45A11P-201ENST00000448043 1134 ntBASIC7.1□□□□□ -1.27
COL5A3P25940 RPS23P9-201ENST00000448848 438 ntBASIC7.1□□□□□ -1.27
COL5A3P25940 AL445687.2-201ENST00000458156 728 ntBASIC7.1□□□□□ -1.27
COL5A3P25940 AC090114.3-201ENST00000479267 829 ntBASIC7.1□□□□□ -1.27
COL5A3P25940 TRBV5-2-201ENST00000489095 273 ntBASIC7.1□□□□□ -1.27
COL5A3P25940 AC024940.3-201ENST00000538551 316 ntBASIC7.1□□□□□ -1.27
COL5A3P25940 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC7.1□□□□□ -1.27
COL5A3P25940 AC137695.1-201ENST00000604126 489 ntBASIC7.1□□□□□ -1.27
COL5A3P25940 IGLCOR22-2-201ENST00000605398 313 ntBASIC7.1□□□□□ -1.27
COL5A3P25940 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
COL5A3P25940 DOCK11P1-201ENST00000553480 5932 ntBASIC7.1□□□□□ -1.27
COL5A3P25940 KCNN3-201ENST00000271915 13033 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL5A3P25940 PHIP-201ENST00000275034 10460 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL5A3P25940 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC7.09□□□□□ -1.27
COL5A3P25940 KIAA1217-204ENST00000376454 7381 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL5A3P25940 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL5A3P25940 ANKRD36BP2-207ENST00000622311 5398 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
COL5A3P25940 CCDC93-201ENST00000319432 6896 ntAPPRIS ALT1 TSL 5 BASIC7.09□□□□□ -1.27
COL5A3P25940 CCDC93-202ENST00000376300 6899 ntAPPRIS P2 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL5A3P25940 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL5A3P25940 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC7.09□□□□□ -1.27
COL5A3P25940 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL5A3P25940 PARN-201ENST00000341484 2100 ntTSL 2 BASIC7.09□□□□□ -1.27
COL5A3P25940 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC7.09□□□□□ -1.27
COL5A3P25940 MBD5-201ENST00000404807 5920 ntTSL 5 BASIC7.09□□□□□ -1.27
COL5A3P25940 AL121722.1-201ENST00000638550 4849 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
COL5A3P25940 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC7.09□□□□□ -1.27
COL5A3P25940 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
COL5A3P25940 PABPC1P8-201ENST00000452851 2086 ntBASIC7.09□□□□□ -1.27
COL5A3P25940 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC7.09□□□□□ -1.27
COL5A3P25940 AP002991.2-201ENST00000623807 2801 ntBASIC7.09□□□□□ -1.27
COL5A3P25940 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC7.09□□□□□ -1.27
COL5A3P25940 AC136624.1-201ENST00000400791 413 ntBASIC7.09□□□□□ -1.27
COL5A3P25940 FABP12P1-201ENST00000401911 322 ntBASIC7.09□□□□□ -1.27
COL5A3P25940 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC7.09□□□□□ -1.27
COL5A3P25940 RN7SKP66-201ENST00000516681 231 ntBASIC7.09□□□□□ -1.27
COL5A3P25940 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC7.09□□□□□ -1.27
COL5A3P25940 CR383656.6-201ENST00000550518 394 ntBASIC7.09□□□□□ -1.27
COL5A3P25940 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC7.09□□□□□ -1.27
COL5A3P25940 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC7.09□□□□□ -1.27
COL5A3P25940 MIR4301-201ENST00000577203 66 ntBASIC7.09□□□□□ -1.27
COL5A3P25940 AC004836.1-201ENST00000623032 634 ntBASIC7.09□□□□□ -1.27
COL5A3P25940 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC7.09□□□□□ -1.27
COL5A3P25940 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
COL5A3P25940 XIAP-201ENST00000355640 8584 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
COL5A3P25940 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
COL5A3P25940 LIMD1-201ENST00000273317 11331 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.28
COL5A3P25940 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.28
COL5A3P25940 PPFIA2-220ENST00000550584 5405 ntTSL 1 (best) BASIC7.09□□□□□ -1.28
COL5A3P25940 WDR7-213ENST00000615645 5257 ntTSL 5 BASIC7.09□□□□□ -1.28
COL5A3P25940 PWAR1-201ENST00000624188 2414 ntBASIC7.08□□□□□ -1.28
COL5A3P25940 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
COL5A3P25940 AC012618.3-201ENST00000415793 2042 ntTSL 5 BASIC7.08□□□□□ -1.28
COL5A3P25940 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
COL5A3P25940 AP003170.5-201ENST00000397185 335 ntBASIC7.08□□□□□ -1.28
COL5A3P25940 AL645733.1-201ENST00000402250 217 ntBASIC7.08□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms