Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 CR383656.1-201ENST00000484916 377 ntBASIC5.56□□□□□ -1.52
SDC1P18827 AC105384.2-201ENST00000508433 640 ntBASIC5.56□□□□□ -1.52
SDC1P18827 PRMT5P1-201ENST00000514351 598 ntBASIC5.56□□□□□ -1.52
SDC1P18827 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC5.56□□□□□ -1.52
SDC1P18827 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC5.56□□□□□ -1.52
SDC1P18827 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC5.56□□□□□ -1.52
SDC1P18827 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC5.56□□□□□ -1.52
SDC1P18827 SEPT4-AS1-202ENST00000580589 653 ntTSL 3 BASIC5.56□□□□□ -1.52
SDC1P18827 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC5.56□□□□□ -1.52
SDC1P18827 AL360012.1-201ENST00000602813 131 ntBASIC5.56□□□□□ -1.52
SDC1P18827 AC005828.7-201ENST00000607331 556 ntBASIC5.56□□□□□ -1.52
SDC1P18827 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC5.56□□□□□ -1.52
SDC1P18827 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC5.56□□□□□ -1.52
SDC1P18827 MIR6809-201ENST00000612189 116 ntBASIC5.56□□□□□ -1.52
SDC1P18827 AL139099.4-201ENST00000614802 114 ntBASIC5.56□□□□□ -1.52
SDC1P18827 AC079776.5-201ENST00000641920 211 ntBASIC5.56□□□□□ -1.52
SDC1P18827 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC5.56□□□□□ -1.52
SDC1P18827 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC5.56□□□□□ -1.52
SDC1P18827 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SDC1P18827 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
SDC1P18827 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.56□□□□□ -1.52
SDC1P18827 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SDC1P18827 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
SDC1P18827 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
SDC1P18827 AL355488.2-201ENST00000609909 2850 ntBASIC5.56□□□□□ -1.52
SDC1P18827 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SDC1P18827 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SDC1P18827 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
SDC1P18827 HSPD1P9-201ENST00000420325 1636 ntBASIC5.56□□□□□ -1.52
SDC1P18827 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
SDC1P18827 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
SDC1P18827 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.55□□□□□ -1.52
SDC1P18827 PARP4P2-201ENST00000446672 3326 ntBASIC5.55□□□□□ -1.52
SDC1P18827 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SDC1P18827 LINC02318-201ENST00000553785 1334 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SDC1P18827 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SDC1P18827 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SDC1P18827 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
SDC1P18827 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SDC1P18827 AL354868.1-201ENST00000417077 482 ntBASIC5.55□□□□□ -1.52
SDC1P18827 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.55□□□□□ -1.52
SDC1P18827 NAP1L4P3-201ENST00000432820 1147 ntBASIC5.55□□□□□ -1.52
SDC1P18827 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC5.55□□□□□ -1.52
SDC1P18827 AC044810.1-201ENST00000480271 711 ntBASIC5.55□□□□□ -1.52
SDC1P18827 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC5.55□□□□□ -1.52
SDC1P18827 BLNK-209ENST00000495266 440 ntTSL 5 BASIC5.55□□□□□ -1.52
SDC1P18827 AC091874.2-201ENST00000505889 720 ntBASIC5.55□□□□□ -1.52
SDC1P18827 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC5.55□□□□□ -1.52
SDC1P18827 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.55□□□□□ -1.52
SDC1P18827 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC5.55□□□□□ -1.52
SDC1P18827 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.55□□□□□ -1.52
SDC1P18827 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC5.55□□□□□ -1.52
SDC1P18827 AC091078.2-201ENST00000557145 559 ntBASIC5.55□□□□□ -1.52
SDC1P18827 AC002519.2-203ENST00000567043 837 ntBASIC5.55□□□□□ -1.52
SDC1P18827 AC145285.4-201ENST00000568183 540 ntTSL 3 BASIC5.55□□□□□ -1.52
SDC1P18827 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.55□□□□□ -1.52
SDC1P18827 APOC2-205ENST00000592257 444 ntTSL 3 BASIC5.55□□□□□ -1.52
SDC1P18827 AC124916.2-201ENST00000604416 224 ntBASIC5.55□□□□□ -1.52
SDC1P18827 HIRAP1-201ENST00000605318 787 ntBASIC5.55□□□□□ -1.52
SDC1P18827 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
SDC1P18827 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC5.55□□□□□ -1.52
SDC1P18827 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC5.55□□□□□ -1.52
SDC1P18827 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC5.55□□□□□ -1.52
SDC1P18827 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
SDC1P18827 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SDC1P18827 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC5.55□□□□□ -1.52
SDC1P18827 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SDC1P18827 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
SDC1P18827 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
SDC1P18827 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.55□□□□□ -1.52
SDC1P18827 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
SDC1P18827 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.55□□□□□ -1.52
SDC1P18827 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.55□□□□□ -1.52
SDC1P18827 GDA-209ENST00000545168 5362 ntTSL 2 BASIC5.55□□□□□ -1.52
SDC1P18827 AC114774.1-201ENST00000507410 1770 ntBASIC5.55□□□□□ -1.52
SDC1P18827 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC5.55□□□□□ -1.52
SDC1P18827 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
SDC1P18827 QRSL1P1-201ENST00000400977 1540 ntBASIC5.54□□□□□ -1.52
SDC1P18827 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5.54□□□□□ -1.52
SDC1P18827 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
SDC1P18827 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SDC1P18827 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC5.54□□□□□ -1.52
SDC1P18827 AC027279.4-201ENST00000624371 2072 ntBASIC5.54□□□□□ -1.52
SDC1P18827 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
SDC1P18827 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
SDC1P18827 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SDC1P18827 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
SDC1P18827 AL592429.1-201ENST00000403909 1473 ntBASIC5.54□□□□□ -1.52
SDC1P18827 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SDC1P18827 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
SDC1P18827 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SDC1P18827 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC5.54□□□□□ -1.52
SDC1P18827 AC087752.1-201ENST00000391360 558 ntBASIC5.54□□□□□ -1.52
SDC1P18827 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
SDC1P18827 AC016739.1-201ENST00000405359 345 ntBASIC5.54□□□□□ -1.52
SDC1P18827 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
SDC1P18827 RN7SKP86-201ENST00000410454 332 ntBASIC5.54□□□□□ -1.52
SDC1P18827 AL354890.1-201ENST00000413730 346 ntBASIC5.54□□□□□ -1.52
SDC1P18827 AL121578.1-201ENST00000428051 892 ntBASIC5.54□□□□□ -1.52
SDC1P18827 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 202.6 ms