Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC104109.1-201ENST00000498563 436 ntBASIC5.81□□□□□ -1.48
HOXC4P09017 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.81□□□□□ -1.48
HOXC4P09017 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC5.81□□□□□ -1.48
HOXC4P09017 MIR4260-201ENST00000583107 67 ntBASIC5.81□□□□□ -1.48
HOXC4P09017 AC011445.2-201ENST00000599274 173 ntBASIC5.81□□□□□ -1.48
HOXC4P09017 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC5.81□□□□□ -1.48
HOXC4P09017 AC126175.1-201ENST00000617041 758 ntBASIC5.81□□□□□ -1.48
HOXC4P09017 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC5.81□□□□□ -1.48
HOXC4P09017 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC5.81□□□□□ -1.48
HOXC4P09017 UOX-205ENST00000640983 544 ntTSL 4 BASIC5.81□□□□□ -1.48
HOXC4P09017 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
HOXC4P09017 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
HOXC4P09017 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.81□□□□□ -1.48
HOXC4P09017 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
HOXC4P09017 AL592429.1-201ENST00000403909 1473 ntBASIC5.81□□□□□ -1.48
HOXC4P09017 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
HOXC4P09017 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
HOXC4P09017 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
HOXC4P09017 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
HOXC4P09017 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.81□□□□□ -1.48
HOXC4P09017 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
HOXC4P09017 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HOXC4P09017 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HOXC4P09017 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
HOXC4P09017 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
HOXC4P09017 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
HOXC4P09017 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
HOXC4P09017 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
HOXC4P09017 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC5.8□□□□□ -1.48
HOXC4P09017 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXC4P09017 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC5.8□□□□□ -1.48
HOXC4P09017 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
HOXC4P09017 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXC4P09017 AC130304.1-201ENST00000622942 2385 ntBASIC5.8□□□□□ -1.48
HOXC4P09017 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXC4P09017 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC5.8□□□□□ -1.48
HOXC4P09017 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HOXC4P09017 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
HOXC4P09017 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXC4P09017 RN7SKP29-201ENST00000410957 272 ntBASIC5.8□□□□□ -1.48
HOXC4P09017 RN7SKP293-201ENST00000411389 296 ntBASIC5.8□□□□□ -1.48
HOXC4P09017 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.8□□□□□ -1.48
HOXC4P09017 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC5.8□□□□□ -1.48
HOXC4P09017 RPS12P17-201ENST00000438591 377 ntBASIC5.8□□□□□ -1.48
HOXC4P09017 AL663074.2-201ENST00000440621 479 ntBASIC5.8□□□□□ -1.48
HOXC4P09017 DNAJC19P5-201ENST00000443295 316 ntBASIC5.8□□□□□ -1.48
HOXC4P09017 AL603882.1-201ENST00000463059 681 ntBASIC5.8□□□□□ -1.48
HOXC4P09017 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC5.8□□□□□ -1.48
HOXC4P09017 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXC4P09017 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC5.8□□□□□ -1.48
HOXC4P09017 CYCSP22-201ENST00000517555 339 ntBASIC5.8□□□□□ -1.48
HOXC4P09017 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.8□□□□□ -1.48
HOXC4P09017 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
HOXC4P09017 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC5.8□□□□□ -1.48
HOXC4P09017 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC5.8□□□□□ -1.48
HOXC4P09017 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC5.8□□□□□ -1.48
HOXC4P09017 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.8□□□□□ -1.48
HOXC4P09017 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.8□□□□□ -1.48
HOXC4P09017 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.8□□□□□ -1.48
HOXC4P09017 AL049840.6-201ENST00000604583 345 ntBASIC5.8□□□□□ -1.48
HOXC4P09017 AC016590.3-201ENST00000611171 753 ntBASIC5.8□□□□□ -1.48
HOXC4P09017 uc_338.26-201ENST00000612659 160 ntBASIC5.8□□□□□ -1.48
HOXC4P09017 AP005431.1-201ENST00000618479 319 ntBASIC5.8□□□□□ -1.48
HOXC4P09017 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC5.8□□□□□ -1.48
HOXC4P09017 MIR193BHG-214ENST00000641765 509 ntBASIC5.8□□□□□ -1.48
HOXC4P09017 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HOXC4P09017 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXC4P09017 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
HOXC4P09017 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXC4P09017 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXC4P09017 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HOXC4P09017 LRRC37A16P-202ENST00000586022 3725 ntBASIC5.8□□□□□ -1.48
HOXC4P09017 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HOXC4P09017 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.8□□□□□ -1.48
HOXC4P09017 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXC4P09017 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
HOXC4P09017 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HOXC4P09017 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXC4P09017 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.8□□□□□ -1.48
HOXC4P09017 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXC4P09017 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
HOXC4P09017 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC5.79□□□□□ -1.48
HOXC4P09017 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
HOXC4P09017 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXC4P09017 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
HOXC4P09017 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC5.79□□□□□ -1.48
HOXC4P09017 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
HOXC4P09017 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC5.79□□□□□ -1.48
HOXC4P09017 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXC4P09017 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HOXC4P09017 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXC4P09017 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HOXC4P09017 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXC4P09017 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
HOXC4P09017 TMSB4XP4-201ENST00000323496 618 ntBASIC5.79□□□□□ -1.48
HOXC4P09017 RN7SKP69-201ENST00000365390 305 ntBASIC5.79□□□□□ -1.48
HOXC4P09017 AL121835.1-201ENST00000404250 354 ntBASIC5.79□□□□□ -1.48
HOXC4P09017 AL022331.1-201ENST00000429025 477 ntBASIC5.79□□□□□ -1.48
HOXC4P09017 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.79□□□□□ -1.48
HOXC4P09017 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms