Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
CCDC39Q9UFE4 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 TC2N-202ENST00000360594 3751 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 ATF3-201ENST00000336937 482 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 OR10D1P-201ENST00000355343 936 ntBASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 MIR513B-201ENST00000385136 84 ntBASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 RNU1-56P-201ENST00000391303 164 ntBASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 AL607077.1-201ENST00000401718 499 ntBASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 GSTA8P-201ENST00000404253 637 ntBASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 MTIF3-203ENST00000405591 889 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 AL445213.1-201ENST00000412589 747 ntBASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 AC073115.2-201ENST00000416708 555 ntTSL 4 BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 LINC01762-201ENST00000423907 454 ntTSL 5 BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 KCND3-AS1-202ENST00000427471 583 ntTSL 3 BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 GTF2A1-202ENST00000434192 1199 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 AL606804.1-201ENST00000435333 538 ntTSL 3 BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 FGF13-AS1-201ENST00000438238 849 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 VN1R25P-201ENST00000443385 738 ntBASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 AL096803.1-201ENST00000456921 1021 ntBASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 SNX24-205ENST00000506996 588 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 RNA5SP278-201ENST00000517055 102 ntBASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 VPS37A-208ENST00000521005 479 ntTSL 3 BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 IGHVII-49-1-201ENST00000521760 224 ntBASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 AP003548.1-201ENST00000523862 711 ntTSL 3 BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 EEF1B2P4-201ENST00000551398 348 ntBASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 OR4C49P-201ENST00000563891 900 ntBASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 AC008551.1-201ENST00000575612 405 ntTSL 5 BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 AC073539.3-201ENST00000601905 386 ntTSL 3 BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 AC025588.2-201ENST00000604851 466 ntBASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 AC105129.3-201ENST00000605455 485 ntBASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 AC010245.2-201ENST00000606908 1167 ntBASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 MIR4435-2HG-219ENST00000609220 883 ntTSL 3 BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 AL596325.2-201ENST00000609669 505 ntTSL 3 BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 AC068944.2-201ENST00000610373 403 ntBASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 AL669942.1-206ENST00000610473 783 ntTSL 3 BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 TSPAN6-205ENST00000614008 900 ntTSL 5 BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 AC010333.3-201ENST00000615100 402 ntBASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 TCL6_3.1-201ENST00000619064 137 ntBASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 AC007204.1-201ENST00000621794 555 ntBASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 AC243725.1-201ENST00000637164 436 ntBASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 AL512329.1-201ENST00000404600 1592 ntBASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 KYNU-203ENST00000409512 1576 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 LINC01252-201ENST00000499291 3673 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 LIPF-201ENST00000238983 1376 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC7.7□□□□□ -1.18
CCDC39Q9UFE4 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 YES1-203ENST00000577961 4554 ntTSL 5 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 KIAA1524-207ENST00000619684 2839 ntAPPRIS ALT1 TSL 5 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 GMFG-201ENST00000253054 616 ntTSL 5 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 RNU5E-4P-201ENST00000364931 120 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 FABP3-201ENST00000373713 725 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 OR7E156P-201ENST00000400303 464 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 RPL7P58-201ENST00000402913 758 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 AL359922.1-201ENST00000404796 935 ntAPPRIS P1 TSL 5 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 CYCSP17-201ENST00000407870 315 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 RN7SKP137-201ENST00000411074 307 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 SETP22-201ENST00000412243 957 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 AL731684.1-201ENST00000415530 439 ntTSL 5 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 LINC01881-201ENST00000416103 412 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 HYALP1-201ENST00000417674 1279 ntBASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC7.69□□□□□ -1.18
CCDC39Q9UFE4 AL596268.1-201ENST00000427910 1048 ntBASIC7.69□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms