Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 AC093225.1-201ENST00000506867 1408 ntBASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 AL096711.1-201ENST00000404780 554 ntBASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 RN7SKP279-201ENST00000411383 298 ntBASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 AC002511.2-201ENST00000413796 450 ntTSL 2 BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 DEFA9P-201ENST00000433042 285 ntBASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 EEF1B2P3-201ENST00000447718 678 ntBASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 AC093166.3-201ENST00000448785 303 ntBASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 CFL1P4-201ENST00000451536 498 ntBASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 GEMIN2P1-201ENST00000454246 752 ntBASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 AC099521.1-201ENST00000482557 334 ntBASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 HSD3BP3-201ENST00000514706 994 ntBASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 IGKV3D-25-201ENST00000519599 235 ntBASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 LINC01151-201ENST00000521608 571 ntTSL 4 BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 AP003080.1-202ENST00000526526 915 ntBASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 AP003396.4-201ENST00000527574 265 ntBASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 AC126615.2-201ENST00000553003 515 ntBASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 MFSD8-239ENST00000641590 2479 ntBASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 MAPK10-261ENST00000641050 3109 ntBASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 ZFP42-201ENST00000326866 2651 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
VPS29Q9UBQ0 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 AC090181.3-201ENST00000624777 1514 ntBASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 Z95114.1-201ENST00000624264 14574 ntBASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 RNA5SP232-201ENST00000364144 119 ntBASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 U3.10-201ENST00000364459 214 ntBASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 RPS14P4-201ENST00000415880 418 ntBASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 VN1R21P-201ENST00000426703 765 ntBASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 AC015983.1-201ENST00000441577 373 ntBASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 AC004129.2-201ENST00000457229 287 ntBASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 AC008413.2-201ENST00000507398 342 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 MED21-206ENST00000546323 575 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 AC023310.2-201ENST00000553844 547 ntBASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 SUPT4H1-207ENST00000581540 668 ntTSL 2 BASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 AL117336.3-201ENST00000603160 1107 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 NANOGP3-201ENST00000605855 286 ntBASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 AP001437.1-201ENST00000608783 456 ntBASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 MIR6809-201ENST00000612189 116 ntBASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 AL157762.1-201ENST00000619612 415 ntBASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
VPS29Q9UBQ0 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC5.59□□□□□ -1.52
VPS29Q9UBQ0 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC5.59□□□□□ -1.52
VPS29Q9UBQ0 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.59□□□□□ -1.52
VPS29Q9UBQ0 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
VPS29Q9UBQ0 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.52
VPS29Q9UBQ0 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
VPS29Q9UBQ0 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS29Q9UBQ0 AC104966.1-201ENST00000467010 1464 ntBASIC5.58□□□□□ -1.52
VPS29Q9UBQ0 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
VPS29Q9UBQ0 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 181 ms