Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.35□□□□□ -1.55
SKA3Q8IX90 TCF12-205ENST00000537840 1598 ntTSL 2 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 RNU1-134P-201ENST00000362935 165 ntBASIC5.35□□□□□ -1.55
SKA3Q8IX90 CRP-204ENST00000368112 787 ntTSL 2 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 RPS7P8-201ENST00000418311 581 ntBASIC5.35□□□□□ -1.55
SKA3Q8IX90 RPL35AP31-201ENST00000418340 337 ntBASIC5.35□□□□□ -1.55
SKA3Q8IX90 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SKA3Q8IX90 AC130360.1-201ENST00000425489 1117 ntBASIC5.35□□□□□ -1.55
SKA3Q8IX90 RPL12P16-201ENST00000431098 498 ntBASIC5.35□□□□□ -1.55
SKA3Q8IX90 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 ZNF619P1-201ENST00000446539 752 ntBASIC5.35□□□□□ -1.55
SKA3Q8IX90 AC093166.3-201ENST00000448785 303 ntBASIC5.35□□□□□ -1.55
SKA3Q8IX90 RPL23AP60-201ENST00000450011 454 ntBASIC5.35□□□□□ -1.55
SKA3Q8IX90 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SKA3Q8IX90 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 PPIAP7-201ENST00000454070 489 ntBASIC5.35□□□□□ -1.55
SKA3Q8IX90 AC118758.1-202ENST00000454719 225 ntBASIC5.35□□□□□ -1.55
SKA3Q8IX90 RN7SL284P-201ENST00000498823 275 ntBASIC5.35□□□□□ -1.55
SKA3Q8IX90 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 CR383658.1-201ENST00000514609 734 ntBASIC5.35□□□□□ -1.55
SKA3Q8IX90 HSD3BP3-201ENST00000514706 994 ntBASIC5.35□□□□□ -1.55
SKA3Q8IX90 TPM3P3-201ENST00000521343 354 ntBASIC5.35□□□□□ -1.55
SKA3Q8IX90 AC130365.2-201ENST00000525882 1201 ntBASIC5.35□□□□□ -1.55
SKA3Q8IX90 AP000620.1-201ENST00000527147 504 ntBASIC5.35□□□□□ -1.55
SKA3Q8IX90 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SKA3Q8IX90 OLR1-210ENST00000544577 924 ntTSL 5 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 AC002519.2-203ENST00000567043 837 ntBASIC5.35□□□□□ -1.55
SKA3Q8IX90 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SKA3Q8IX90 AC087392.1-201ENST00000576252 820 ntTSL 2 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 AC016839.1-201ENST00000578162 867 ntBASIC5.35□□□□□ -1.55
SKA3Q8IX90 GLYATL1P2-202ENST00000588046 902 ntBASIC5.35□□□□□ -1.55
SKA3Q8IX90 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 OR51C1P-201ENST00000608504 942 ntBASIC5.35□□□□□ -1.55
SKA3Q8IX90 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 AL512652.1-201ENST00000619006 500 ntBASIC5.35□□□□□ -1.55
SKA3Q8IX90 MIR6806-201ENST00000622141 64 ntBASIC5.35□□□□□ -1.55
SKA3Q8IX90 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SKA3Q8IX90 SATB1-209ENST00000454909 3755 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SKA3Q8IX90 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SKA3Q8IX90 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
SKA3Q8IX90 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
SKA3Q8IX90 AC119674.1-202ENST00000641333 1860 ntBASIC5.34□□□□□ -1.55
SKA3Q8IX90 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.34□□□□□ -1.55
SKA3Q8IX90 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SKA3Q8IX90 AC109446.4-201ENST00000623235 2755 ntBASIC5.34□□□□□ -1.55
SKA3Q8IX90 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SKA3Q8IX90 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SKA3Q8IX90 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
SKA3Q8IX90 MTCO1P46-201ENST00000451639 1491 ntBASIC5.34□□□□□ -1.55
SKA3Q8IX90 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.34□□□□□ -1.55
SKA3Q8IX90 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC5.34□□□□□ -1.55
SKA3Q8IX90 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
SKA3Q8IX90 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.34□□□□□ -1.55
SKA3Q8IX90 RNA5SP453-201ENST00000362503 119 ntBASIC5.34□□□□□ -1.55
SKA3Q8IX90 RNU105B-201ENST00000364478 208 ntBASIC5.34□□□□□ -1.55
SKA3Q8IX90 AL132875.1-201ENST00000403623 949 ntBASIC5.34□□□□□ -1.55
SKA3Q8IX90 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC5.34□□□□□ -1.55
SKA3Q8IX90 RPS15AP30-201ENST00000420976 390 ntBASIC5.34□□□□□ -1.55
SKA3Q8IX90 AC092651.1-201ENST00000426110 312 ntBASIC5.34□□□□□ -1.55
SKA3Q8IX90 CCNB1IP1P1-201ENST00000428976 839 ntBASIC5.34□□□□□ -1.55
SKA3Q8IX90 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC5.34□□□□□ -1.55
SKA3Q8IX90 AC023141.3-201ENST00000436698 278 ntBASIC5.34□□□□□ -1.55
SKA3Q8IX90 SEPT14P12-201ENST00000442280 560 ntBASIC5.34□□□□□ -1.55
SKA3Q8IX90 OR52I1-201ENST00000450052 1050 ntBASIC5.34□□□□□ -1.55
SKA3Q8IX90 AC111000.5-201ENST00000506559 1178 ntBASIC5.34□□□□□ -1.55
SKA3Q8IX90 AC009879.1-201ENST00000520029 839 ntBASIC5.34□□□□□ -1.55
SKA3Q8IX90 AC084121.1-201ENST00000533882 835 ntBASIC5.34□□□□□ -1.55
SKA3Q8IX90 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
SKA3Q8IX90 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC5.34□□□□□ -1.55
SKA3Q8IX90 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC5.34□□□□□ -1.55
SKA3Q8IX90 AC007346.1-201ENST00000569208 867 ntBASIC5.34□□□□□ -1.55
SKA3Q8IX90 AP001357.1-201ENST00000586304 1053 ntBASIC5.34□□□□□ -1.55
SKA3Q8IX90 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC5.34□□□□□ -1.55
SKA3Q8IX90 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SKA3Q8IX90 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC5.34□□□□□ -1.55
SKA3Q8IX90 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC5.34□□□□□ -1.55
SKA3Q8IX90 AC073333.2-201ENST00000603589 769 ntBASIC5.34□□□□□ -1.55
SKA3Q8IX90 AL049840.6-201ENST00000604583 345 ntBASIC5.34□□□□□ -1.55
SKA3Q8IX90 AL353684.1-201ENST00000622677 1120 ntBASIC5.34□□□□□ -1.55
SKA3Q8IX90 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
SKA3Q8IX90 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
SKA3Q8IX90 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SKA3Q8IX90 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SKA3Q8IX90 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.34□□□□□ -1.55
SKA3Q8IX90 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SKA3Q8IX90 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SKA3Q8IX90 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms