Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 HMGB1P32-201ENST00000425971 565 ntBASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 AC004453.1-201ENST00000487895 408 ntBASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 RN7SL184P-201ENST00000488308 297 ntBASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 AP000676.2-201ENST00000529711 301 ntBASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 GSTP1P1-201ENST00000548078 319 ntBASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 IL1RAP-202ENST00000317757 5413 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 LINC01128-205ENST00000445118 6606 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 AL139805.2-201ENST00000455305 2433 ntBASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 MKL2-201ENST00000318282 8608 ntAPPRIS P3 TSL 5 BASIC7.18□□□□□ -1.26
CCDC88AQ3V6T2 NLGN4X-202ENST00000381092 3750 ntAPPRIS P2 TSL 2 BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 AC099677.3-201ENST00000427081 395 ntBASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 CYCSP12-201ENST00000437729 300 ntBASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 RPS11P7-201ENST00000442125 465 ntBASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 AC073850.1-201ENST00000449243 255 ntBASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 DNAJB5P1-201ENST00000454004 806 ntBASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 AL671862.1-201ENST00000515851 349 ntBASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 AC004890.3-201ENST00000605566 1095 ntBASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 AL353763.1-201ENST00000624467 1628 ntBASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 LINC01776-201ENST00000418344 2229 ntTSL 2 BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 LRRC8B-203ENST00000439853 7474 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 AC079753.1-201ENST00000623243 3868 ntBASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 GALK2-201ENST00000327171 5299 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 POT1-202ENST00000393329 3950 ntTSL 5 BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 MRPS16P1-201ENST00000523462 412 ntBASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 OR7E158P-201ENST00000524483 910 ntBASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 AC016251.2-201ENST00000623393 3089 ntBASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 AL161912.4-201ENST00000623889 2468 ntBASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC7.17□□□□□ -1.26
CCDC88AQ3V6T2 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 UG0898H09-202ENST00000623646 7040 ntBASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 RPL23P2-201ENST00000320371 421 ntBASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 RAB28P2-201ENST00000454299 641 ntBASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 AC022215.1-201ENST00000481770 362 ntBASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 RPEP1-201ENST00000504507 658 ntBASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 OR56A7P-201ENST00000524865 941 ntBASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 RBM22P1-201ENST00000578589 1214 ntBASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 AC126915.2-201ENST00000610957 190 ntBASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC7.16□□□□□ -1.26
CCDC88AQ3V6T2 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC7.16□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 116.7 ms