Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 RNF146-210ENST00000608991 2169 ntAPPRIS P3 TSL 4 BASIC3.98□□□□□ -1.77
PRKDCP78527 ICOSLG-204ENST00000407780 7080 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 OR56B1-201ENST00000317121 2075 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
PRKDCP78527 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
PRKDCP78527 SPATA31D3-201ENST00000445385 4785 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 FAM168A-201ENST00000064778 7296 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 ATP7B-201ENST00000242839 6638 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 ZFYVE26-207ENST00000555452 7309 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 BACH2-210ENST00000537989 9108 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 KLHL32-207ENST00000620278 2642 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 LAMA5-201ENST00000252999 11426 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
PRKDCP78527 RNU4-39P-201ENST00000362455 127 ntBASIC3.97□□□□□ -1.77
PRKDCP78527 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC3.97□□□□□ -1.77
PRKDCP78527 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
PRKDCP78527 RPL10P17-201ENST00000453852 316 ntBASIC3.97□□□□□ -1.77
PRKDCP78527 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC3.97□□□□□ -1.77
PRKDCP78527 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC3.97□□□□□ -1.77
PRKDCP78527 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC3.97□□□□□ -1.77
PRKDCP78527 AC005000.1-201ENST00000536192 288 ntBASIC3.97□□□□□ -1.77
PRKDCP78527 EDDM3DP-201ENST00000554692 434 ntBASIC3.97□□□□□ -1.77
PRKDCP78527 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC3.97□□□□□ -1.77
PRKDCP78527 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
PRKDCP78527 EML5-201ENST00000380664 5910 ntTSL 5 BASIC3.97□□□□□ -1.77
PRKDCP78527 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
PRKDCP78527 LGALS8-219ENST00000526589 6420 ntAPPRIS P4 TSL 5 BASIC3.97□□□□□ -1.77
PRKDCP78527 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PRKDCP78527 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC3.97□□□□□ -1.77
PRKDCP78527 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC3.97□□□□□ -1.77
PRKDCP78527 SH3GLB1-201ENST00000370558 6371 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PRKDCP78527 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC3.97□□□□□ -1.77
PRKDCP78527 AC104447.1-201ENST00000624214 2124 ntBASIC3.97□□□□□ -1.77
PRKDCP78527 CPNE4-208ENST00000511604 2503 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PRKDCP78527 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PRKDCP78527 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PRKDCP78527 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
PRKDCP78527 SHPRH-206ENST00000438092 6994 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
PRKDCP78527 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
PRKDCP78527 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC3.97□□□□□ -1.77
PRKDCP78527 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC3.97□□□□□ -1.77
PRKDCP78527 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC3.97□□□□□ -1.77
PRKDCP78527 AC073575.2-201ENST00000614212 627 ntBASIC3.97□□□□□ -1.77
PRKDCP78527 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
PRKDCP78527 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC3.97□□□□□ -1.77
PRKDCP78527 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC3.97□□□□□ -1.77
PRKDCP78527 SH3PXD2A-202ENST00000355946 11245 ntAPPRIS P2 TSL 1 (best) BASIC3.97□□□□□ -1.77
PRKDCP78527 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PRKDCP78527 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
PRKDCP78527 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
PRKDCP78527 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC3.97□□□□□ -1.77
PRKDCP78527 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PRKDCP78527 SIPA1L1-203ENST00000537413 4129 ntTSL 2 BASIC3.97□□□□□ -1.77
PRKDCP78527 ZNF845-202ENST00000595091 4413 ntAPPRIS P1 TSL 4 BASIC3.97□□□□□ -1.77
PRKDCP78527 CREB3L2-207ENST00000616381 7133 ntTSL 5 BASIC3.97□□□□□ -1.77
PRKDCP78527 SON-202ENST00000356577 8813 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
PRKDCP78527 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
PRKDCP78527 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.97□□□□□ -1.77
PRKDCP78527 AC023141.6-201ENST00000429418 337 ntBASIC3.97□□□□□ -1.77
PRKDCP78527 AL136455.1-201ENST00000441083 1240 ntBASIC3.97□□□□□ -1.77
PRKDCP78527 AC023141.8-201ENST00000442554 208 ntBASIC3.97□□□□□ -1.77
PRKDCP78527 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC3.97□□□□□ -1.77
PRKDCP78527 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC3.97□□□□□ -1.77
PRKDCP78527 RNA5SP143-201ENST00000516936 115 ntBASIC3.97□□□□□ -1.77
PRKDCP78527 IGHVII-44-2-201ENST00000517728 250 ntBASIC3.97□□□□□ -1.77
PRKDCP78527 AC090458.1-203ENST00000527757 546 ntTSL 3 BASIC3.97□□□□□ -1.77
PRKDCP78527 MIR4737-201ENST00000583979 81 ntBASIC3.97□□□□□ -1.77
PRKDCP78527 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC3.97□□□□□ -1.77
PRKDCP78527 SPATA31B1P-201ENST00000434692 4016 ntBASIC3.97□□□□□ -1.77
PRKDCP78527 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC3.97□□□□□ -1.77
PRKDCP78527 TOGARAM1-201ENST00000361462 6375 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PRKDCP78527 MYLK-204ENST00000360304 7738 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
PRKDCP78527 NUDCD2-201ENST00000302764 8005 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PRKDCP78527 DNMBP-204ENST00000636706 5437 ntTSL 2 BASIC3.97□□□□□ -1.77
PRKDCP78527 DOK6-201ENST00000382713 8890 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
PRKDCP78527 ZC3HAV1-201ENST00000242351 7100 ntAPPRIS P2 TSL 1 (best) BASIC3.97□□□□□ -1.77
PRKDCP78527 CCT8P1-201ENST00000413611 1657 ntBASIC3.97□□□□□ -1.77
PRKDCP78527 AL132640.2-201ENST00000559968 1698 ntBASIC3.97□□□□□ -1.77
PRKDCP78527 DST-206ENST00000370788 17657 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
PRKDCP78527 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
PRKDCP78527 SPATA31D1-201ENST00000344803 4833 ntAPPRIS P1 TSL 2 BASIC3.97□□□□□ -1.77
PRKDCP78527 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC3.97□□□□□ -1.77
PRKDCP78527 UBE2V1P14-201ENST00000415815 558 ntBASIC3.97□□□□□ -1.77
PRKDCP78527 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC3.97□□□□□ -1.77
PRKDCP78527 RN7SKP92-201ENST00000517266 244 ntBASIC3.97□□□□□ -1.77
PRKDCP78527 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
PRKDCP78527 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC3.97□□□□□ -1.77
PRKDCP78527 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC3.97□□□□□ -1.77
PRKDCP78527 AC095055.1-201ENST00000603472 1113 ntBASIC3.97□□□□□ -1.77
PRKDCP78527 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC3.97□□□□□ -1.77
PRKDCP78527 LINC02367-201ENST00000567749 4388 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
PRKDCP78527 USP8-204ENST00000425032 3559 ntTSL 2 BASIC3.97□□□□□ -1.77
PRKDCP78527 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
PRKDCP78527 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC3.96□□□□□ -1.77
PRKDCP78527 KIAA1958-201ENST00000337530 11775 ntAPPRIS P2 TSL 1 (best) BASIC3.96□□□□□ -1.77
PRKDCP78527 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC3.96□□□□□ -1.77
PRKDCP78527 AL359922.2-201ENST00000581788 3017 ntBASIC3.96□□□□□ -1.77
PRKDCP78527 RNF41-201ENST00000345093 5596 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
PRKDCP78527 ADAM22-205ENST00000398209 9144 ntAPPRIS P4 TSL 1 (best) BASIC3.96□□□□□ -1.77
PRKDCP78527 LRRC7-201ENST00000035383 5000 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.77
PRKDCP78527 KIAA0040-201ENST00000423313 4564 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 128.9 ms