Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CDX2Q99626 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CDX2Q99626 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CDX2Q99626 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CDX2Q99626 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDX2Q99626 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.75■□□□□ 0.91
CDX2Q99626 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDX2Q99626 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CDX2Q99626 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
CDX2Q99626 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
CDX2Q99626 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.75■□□□□ 0.91
CDX2Q99626 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CDX2Q99626 PMS2P1-201ENST00000431037 1228 ntBASIC20.75■□□□□ 0.91
CDX2Q99626 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CDX2Q99626 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
CDX2Q99626 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
CDX2Q99626 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDX2Q99626 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDX2Q99626 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CDX2Q99626 BX119927.1-201ENST00000636596 1552 ntBASIC20.75■□□□□ 0.91
CDX2Q99626 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDX2Q99626 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CDX2Q99626 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.75■□□□□ 0.91
CDX2Q99626 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
CDX2Q99626 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CDX2Q99626 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.74■□□□□ 0.91
CDX2Q99626 HBZP1-201ENST00000354915 429 ntBASIC20.74■□□□□ 0.91
CDX2Q99626 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDX2Q99626 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC20.74■□□□□ 0.91
CDX2Q99626 AC091304.2-201ENST00000564639 760 ntBASIC20.74■□□□□ 0.91
CDX2Q99626 AC011498.5-201ENST00000592027 486 ntBASIC20.74■□□□□ 0.91
CDX2Q99626 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC20.74■□□□□ 0.91
CDX2Q99626 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDX2Q99626 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CDX2Q99626 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CDX2Q99626 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.74■□□□□ 0.91
CDX2Q99626 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CDX2Q99626 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.73■□□□□ 0.91
CDX2Q99626 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC20.73■□□□□ 0.91
CDX2Q99626 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.73■□□□□ 0.91
CDX2Q99626 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CDX2Q99626 MRPL3P1-201ENST00000400109 1033 ntBASIC20.73■□□□□ 0.91
CDX2Q99626 DERL1-203ENST00000419562 918 ntTSL 2 BASIC20.73■□□□□ 0.91
CDX2Q99626 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CDX2Q99626 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.73■□□□□ 0.91
CDX2Q99626 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.73■□□□□ 0.91
CDX2Q99626 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CDX2Q99626 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC20.73■□□□□ 0.91
CDX2Q99626 NEK4P2-201ENST00000580004 1012 ntBASIC20.73■□□□□ 0.91
CDX2Q99626 AP002414.4-201ENST00000589764 1148 ntBASIC20.73■□□□□ 0.91
CDX2Q99626 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC20.73■□□□□ 0.91
CDX2Q99626 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CDX2Q99626 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CDX2Q99626 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.73■□□□□ 0.91
CDX2Q99626 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC20.73■□□□□ 0.91
CDX2Q99626 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CDX2Q99626 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CDX2Q99626 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CDX2Q99626 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
CDX2Q99626 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CDX2Q99626 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
CDX2Q99626 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CDX2Q99626 FAM220CP-201ENST00000395253 831 ntBASIC20.72■□□□□ 0.91
CDX2Q99626 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC20.72■□□□□ 0.91
CDX2Q99626 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
CDX2Q99626 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.72■□□□□ 0.91
CDX2Q99626 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CDX2Q99626 LINC01711-201ENST00000598340 967 ntBASIC20.72■□□□□ 0.91
CDX2Q99626 NME4-212ENST00000621774 904 ntTSL 3 BASIC20.72■□□□□ 0.91
CDX2Q99626 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CDX2Q99626 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
CDX2Q99626 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.72■□□□□ 0.91
CDX2Q99626 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CDX2Q99626 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CDX2Q99626 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
CDX2Q99626 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.71■□□□□ 0.91
CDX2Q99626 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.71■□□□□ 0.91
CDX2Q99626 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CDX2Q99626 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
CDX2Q99626 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CDX2Q99626 MIR574-201ENST00000385209 96 ntBASIC20.71■□□□□ 0.91
CDX2Q99626 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CDX2Q99626 MIR1233-2-201ENST00000408138 82 ntBASIC20.71■□□□□ 0.91
CDX2Q99626 MIR1233-1-201ENST00000408722 82 ntBASIC20.71■□□□□ 0.91
CDX2Q99626 AL590627.1-203ENST00000421194 1026 ntBASIC20.71■□□□□ 0.91
CDX2Q99626 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
CDX2Q99626 HMGN1P19-201ENST00000436976 333 ntBASIC20.71■□□□□ 0.91
CDX2Q99626 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
CDX2Q99626 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC20.71■□□□□ 0.91
CDX2Q99626 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC20.71■□□□□ 0.91
CDX2Q99626 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
CDX2Q99626 CALM3-211ENST00000598871 561 ntTSL 4 BASIC20.71■□□□□ 0.91
CDX2Q99626 AL121772.3-201ENST00000610840 674 ntBASIC20.71■□□□□ 0.91
CDX2Q99626 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CDX2Q99626 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC20.71■□□□□ 0.91
CDX2Q99626 AF228730.7-201ENST00000641842 219 ntBASIC20.71■□□□□ 0.91
CDX2Q99626 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CDX2Q99626 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC20.71■□□□□ 0.91
CDX2Q99626 TFP1-202ENST00000475455 1573 ntBASIC20.71■□□□□ 0.91
CDX2Q99626 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms