Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC21.57■■□□□ 1.04
CLDN3O15551 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
CLDN3O15551 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC21.57■■□□□ 1.04
CLDN3O15551 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
CLDN3O15551 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC21.57■■□□□ 1.04
CLDN3O15551 SPIB-206ENST00000596074 847 ntTSL 2 BASIC21.57■■□□□ 1.04
CLDN3O15551 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC21.57■■□□□ 1.04
CLDN3O15551 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC21.57■■□□□ 1.04
CLDN3O15551 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLDN3O15551 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC21.57■■□□□ 1.04
CLDN3O15551 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLDN3O15551 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
CLDN3O15551 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLDN3O15551 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC21.57■■□□□ 1.04
CLDN3O15551 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLDN3O15551 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
CLDN3O15551 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLDN3O15551 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLDN3O15551 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC21.56■■□□□ 1.04
CLDN3O15551 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLDN3O15551 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CLDN3O15551 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLDN3O15551 BAALC-201ENST00000297574 801 ntTSL 3 BASIC21.56■■□□□ 1.04
CLDN3O15551 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLDN3O15551 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC21.56■■□□□ 1.04
CLDN3O15551 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLDN3O15551 F2R-202ENST00000505600 442 ntTSL 2 BASIC21.56■■□□□ 1.04
CLDN3O15551 RHOD-202ENST00000532559 538 ntTSL 3 BASIC21.56■■□□□ 1.04
CLDN3O15551 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC21.56■■□□□ 1.04
CLDN3O15551 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CLDN3O15551 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLDN3O15551 PCDHAC2-203ENST00000615316 3011 ntBASIC21.56■■□□□ 1.04
CLDN3O15551 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLDN3O15551 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLDN3O15551 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC21.56■■□□□ 1.04
CLDN3O15551 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CLDN3O15551 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC21.55■■□□□ 1.04
CLDN3O15551 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLDN3O15551 AP006587.1-201ENST00000534129 1502 ntBASIC21.55■■□□□ 1.04
CLDN3O15551 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
CLDN3O15551 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CLDN3O15551 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLDN3O15551 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLDN3O15551 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
CLDN3O15551 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLDN3O15551 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CLDN3O15551 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLDN3O15551 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC21.55■■□□□ 1.04
CLDN3O15551 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC21.55■■□□□ 1.04
CLDN3O15551 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC21.55■■□□□ 1.04
CLDN3O15551 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC21.55■■□□□ 1.04
CLDN3O15551 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC21.55■■□□□ 1.04
CLDN3O15551 AP006294.2-201ENST00000641667 209 ntBASIC21.55■■□□□ 1.04
CLDN3O15551 AP001271.2-201ENST00000624018 1556 ntBASIC21.55■■□□□ 1.04
CLDN3O15551 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CLDN3O15551 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC21.55■■□□□ 1.04
CLDN3O15551 AC112907.3-201ENST00000577781 2400 ntBASIC21.55■■□□□ 1.04
CLDN3O15551 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CLDN3O15551 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CLDN3O15551 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
CLDN3O15551 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLDN3O15551 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLDN3O15551 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLDN3O15551 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC21.54■■□□□ 1.04
CLDN3O15551 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLDN3O15551 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
CLDN3O15551 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC21.54■■□□□ 1.04
CLDN3O15551 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21.54■■□□□ 1.04
CLDN3O15551 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC21.54■■□□□ 1.04
CLDN3O15551 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
CLDN3O15551 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
CLDN3O15551 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CLDN3O15551 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLDN3O15551 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLDN3O15551 AC066615.1-201ENST00000640911 628 ntBASIC21.54■■□□□ 1.04
CLDN3O15551 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLDN3O15551 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLDN3O15551 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC21.54■■□□□ 1.04
CLDN3O15551 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.54■■□□□ 1.04
CLDN3O15551 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLDN3O15551 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLDN3O15551 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLDN3O15551 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
CLDN3O15551 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC21.53■■□□□ 1.04
CLDN3O15551 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLDN3O15551 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CLDN3O15551 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC21.53■■□□□ 1.04
CLDN3O15551 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CLDN3O15551 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC21.53■■□□□ 1.04
CLDN3O15551 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC21.53■■□□□ 1.04
CLDN3O15551 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC21.53■■□□□ 1.04
CLDN3O15551 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC21.53■■□□□ 1.04
CLDN3O15551 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
CLDN3O15551 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
CLDN3O15551 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
CLDN3O15551 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLDN3O15551 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLDN3O15551 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
CLDN3O15551 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC21.52■■□□□ 1.04
CLDN3O15551 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms