Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC32.2■■■□□ 2.74
CHD1O14646 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC32.19■■■□□ 2.74
CHD1O14646 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC32.19■■■□□ 2.74
CHD1O14646 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
CHD1O14646 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC32.19■■■□□ 2.74
CHD1O14646 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC32.19■■■□□ 2.74
CHD1O14646 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC32.19■■■□□ 2.74
CHD1O14646 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC32.19■■■□□ 2.74
CHD1O14646 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC32.19■■■□□ 2.74
CHD1O14646 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC32.19■■■□□ 2.74
CHD1O14646 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC32.19■■■□□ 2.74
CHD1O14646 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC32.19■■■□□ 2.74
CHD1O14646 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC32.18■■■□□ 2.74
CHD1O14646 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC32.18■■■□□ 2.74
CHD1O14646 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
CHD1O14646 DERL1-203ENST00000419562 918 ntTSL 2 BASIC32.18■■■□□ 2.74
CHD1O14646 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC32.18■■■□□ 2.74
CHD1O14646 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC32.18■■■□□ 2.74
CHD1O14646 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC32.18■■■□□ 2.74
CHD1O14646 CKBP1-201ENST00000565489 1086 ntBASIC32.18■■■□□ 2.74
CHD1O14646 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
CHD1O14646 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC32.18■■■□□ 2.74
CHD1O14646 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC32.18■■■□□ 2.74
CHD1O14646 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC32.17■■■□□ 2.74
CHD1O14646 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
CHD1O14646 AC120114.3-201ENST00000611923 658 ntBASIC32.17■■■□□ 2.74
CHD1O14646 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
CHD1O14646 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC32.17■■■□□ 2.74
CHD1O14646 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
CHD1O14646 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC32.17■■■□□ 2.74
CHD1O14646 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
CHD1O14646 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC32.17■■■□□ 2.74
CHD1O14646 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
CHD1O14646 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
CHD1O14646 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC32.16■■■□□ 2.74
CHD1O14646 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
CHD1O14646 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC32.16■■■□□ 2.74
CHD1O14646 KRT18P1-202ENST00000452408 1331 ntBASIC32.16■■■□□ 2.74
CHD1O14646 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
CHD1O14646 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC32.16■■■□□ 2.74
CHD1O14646 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC32.16■■■□□ 2.74
CHD1O14646 AC139530.3-201ENST00000620344 690 ntBASIC32.16■■■□□ 2.74
CHD1O14646 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC32.16■■■□□ 2.74
CHD1O14646 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC32.15■■■□□ 2.74
CHD1O14646 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC32.15■■■□□ 2.74
CHD1O14646 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC32.15■■■□□ 2.74
CHD1O14646 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC32.15■■■□□ 2.74
CHD1O14646 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC32.15■■■□□ 2.74
CHD1O14646 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
CHD1O14646 GCSHP2-201ENST00000560971 527 ntBASIC32.14■■■□□ 2.74
CHD1O14646 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC32.14■■■□□ 2.74
CHD1O14646 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC32.14■■■□□ 2.74
CHD1O14646 AC140113.3-201ENST00000605663 199 ntBASIC32.14■■■□□ 2.74
CHD1O14646 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
CHD1O14646 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC32.14■■■□□ 2.74
CHD1O14646 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC32.14■■■□□ 2.74
CHD1O14646 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC32.14■■■□□ 2.74
CHD1O14646 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC32.14■■■□□ 2.74
CHD1O14646 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC32.14■■■□□ 2.74
CHD1O14646 GLRB-205ENST00000512619 728 ntTSL 3 BASIC32.14■■■□□ 2.74
CHD1O14646 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
CHD1O14646 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
CHD1O14646 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
CHD1O14646 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC32.14■■■□□ 2.74
CHD1O14646 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC32.13■■■□□ 2.73
CHD1O14646 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC32.13■■■□□ 2.73
CHD1O14646 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
CHD1O14646 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC32.13■■■□□ 2.73
CHD1O14646 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
CHD1O14646 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC32.13■■■□□ 2.73
CHD1O14646 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC32.13■■■□□ 2.73
CHD1O14646 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC32.13■■■□□ 2.73
CHD1O14646 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC32.13■■■□□ 2.73
CHD1O14646 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
CHD1O14646 AC018553.1-201ENST00000616682 1458 ntBASIC32.12■■■□□ 2.73
CHD1O14646 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
CHD1O14646 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
CHD1O14646 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
CHD1O14646 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC32.12■■■□□ 2.73
CHD1O14646 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC32.12■■■□□ 2.73
CHD1O14646 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
CHD1O14646 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
CHD1O14646 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC32.12■■■□□ 2.73
CHD1O14646 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC32.12■■■□□ 2.73
CHD1O14646 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC32.12■■■□□ 2.73
CHD1O14646 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC32.12■■■□□ 2.73
CHD1O14646 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC32.12■■■□□ 2.73
CHD1O14646 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC32.12■■■□□ 2.73
CHD1O14646 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
CHD1O14646 KRT8P17-201ENST00000453110 1448 ntBASIC32.11■■■□□ 2.73
CHD1O14646 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
CHD1O14646 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC32.11■■■□□ 2.73
CHD1O14646 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
CHD1O14646 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC32.11■■■□□ 2.73
CHD1O14646 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC32.11■■■□□ 2.73
CHD1O14646 GXYLT1P4-201ENST00000613576 1192 ntBASIC32.11■■■□□ 2.73
CHD1O14646 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC32.11■■■□□ 2.73
CHD1O14646 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC32.11■■■□□ 2.73
CHD1O14646 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
CHD1O14646 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC32.1■■■□□ 2.73
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms