Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 BTG1P1-201ENST00000540396 508 ntBASIC5.6□□□□□ -1.51
SDC1P18827 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC5.6□□□□□ -1.51
SDC1P18827 AP005119.1-201ENST00000580956 292 ntBASIC5.6□□□□□ -1.51
SDC1P18827 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC5.6□□□□□ -1.51
SDC1P18827 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SDC1P18827 AC011500.1-201ENST00000601963 469 ntBASIC5.6□□□□□ -1.51
SDC1P18827 AC025857.2-201ENST00000602711 238 ntBASIC5.6□□□□□ -1.51
SDC1P18827 AC005479.3-201ENST00000602790 431 ntBASIC5.6□□□□□ -1.51
SDC1P18827 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
SDC1P18827 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.6□□□□□ -1.51
SDC1P18827 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC5.6□□□□□ -1.51
SDC1P18827 MFSD8-239ENST00000641590 2479 ntBASIC5.6□□□□□ -1.51
SDC1P18827 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
SDC1P18827 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.6□□□□□ -1.51
SDC1P18827 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SDC1P18827 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC5.6□□□□□ -1.51
SDC1P18827 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC5.6□□□□□ -1.51
SDC1P18827 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SDC1P18827 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SDC1P18827 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SDC1P18827 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
SDC1P18827 AC004076.2-201ENST00000620532 3323 ntBASIC5.59□□□□□ -1.51
SDC1P18827 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.59□□□□□ -1.51
SDC1P18827 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
SDC1P18827 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.59□□□□□ -1.51
SDC1P18827 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
SDC1P18827 MANSC1-204ENST00000545735 1501 ntTSL 2 BASIC5.59□□□□□ -1.51
SDC1P18827 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC5.59□□□□□ -1.51
SDC1P18827 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SDC1P18827 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SDC1P18827 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
SDC1P18827 DNM1P47-203ENST00000571780 12667 ntBASIC5.59□□□□□ -1.51
SDC1P18827 AC025470.1-201ENST00000510053 2032 ntBASIC5.59□□□□□ -1.51
SDC1P18827 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC5.59□□□□□ -1.51
SDC1P18827 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SDC1P18827 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SDC1P18827 RN7SKP250-201ENST00000363924 321 ntBASIC5.59□□□□□ -1.51
SDC1P18827 RNA5SP279-201ENST00000365513 117 ntBASIC5.59□□□□□ -1.51
SDC1P18827 RN7SKP279-201ENST00000411383 298 ntBASIC5.59□□□□□ -1.51
SDC1P18827 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC5.59□□□□□ -1.51
SDC1P18827 THEM7P-201ENST00000419556 672 ntBASIC5.59□□□□□ -1.51
SDC1P18827 AL139158.1-201ENST00000424719 340 ntBASIC5.59□□□□□ -1.51
SDC1P18827 AL133268.4-201ENST00000424868 472 ntTSL 3 BASIC5.59□□□□□ -1.51
SDC1P18827 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC5.59□□□□□ -1.51
SDC1P18827 AC242426.1-201ENST00000435270 960 ntBASIC5.59□□□□□ -1.51
SDC1P18827 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC5.59□□□□□ -1.51
SDC1P18827 AC015983.1-201ENST00000441577 373 ntBASIC5.59□□□□□ -1.51
SDC1P18827 REG1CP-206ENST00000447469 496 ntBASIC5.59□□□□□ -1.51
SDC1P18827 HMGB1P7-201ENST00000450921 612 ntBASIC5.59□□□□□ -1.51
SDC1P18827 AC073476.1-201ENST00000452854 407 ntBASIC5.59□□□□□ -1.51
SDC1P18827 AC098818.1-201ENST00000478593 252 ntBASIC5.59□□□□□ -1.51
SDC1P18827 AL158068.1-201ENST00000506116 616 ntBASIC5.59□□□□□ -1.51
SDC1P18827 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC5.59□□□□□ -1.51
SDC1P18827 AC136777.2-201ENST00000522979 358 ntBASIC5.59□□□□□ -1.51
SDC1P18827 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC5.59□□□□□ -1.51
SDC1P18827 AC103843.1-201ENST00000527318 682 ntTSL 4 BASIC5.59□□□□□ -1.51
SDC1P18827 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.59□□□□□ -1.51
SDC1P18827 LDHC-203ENST00000535809 757 ntTSL 5 BASIC5.59□□□□□ -1.51
SDC1P18827 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC5.59□□□□□ -1.51
SDC1P18827 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC5.59□□□□□ -1.51
SDC1P18827 LINC01477-201ENST00000566101 1226 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SDC1P18827 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC5.59□□□□□ -1.51
SDC1P18827 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC5.59□□□□□ -1.51
SDC1P18827 AC004801.6-201ENST00000616571 978 ntBASIC5.59□□□□□ -1.51
SDC1P18827 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC5.59□□□□□ -1.51
SDC1P18827 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SDC1P18827 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SDC1P18827 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
SDC1P18827 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
SDC1P18827 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
SDC1P18827 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.52
SDC1P18827 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC5.59□□□□□ -1.52
SDC1P18827 AC099654.3-201ENST00000447087 1546 ntBASIC5.58□□□□□ -1.52
SDC1P18827 AC020656.2-201ENST00000613291 5309 ntBASIC5.58□□□□□ -1.52
SDC1P18827 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SDC1P18827 AL354854.1-201ENST00000455940 1363 ntBASIC5.58□□□□□ -1.52
SDC1P18827 AC104662.2-201ENST00000512921 1388 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
SDC1P18827 AC140479.2-201ENST00000421567 3130 ntBASIC5.58□□□□□ -1.52
SDC1P18827 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
SDC1P18827 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SDC1P18827 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SDC1P18827 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC5.58□□□□□ -1.52
SDC1P18827 RN7SKP184-201ENST00000362348 333 ntBASIC5.58□□□□□ -1.52
SDC1P18827 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SDC1P18827 RNA5SP91-201ENST00000390902 119 ntBASIC5.58□□□□□ -1.52
SDC1P18827 FIGN-202ENST00000409634 746 ntTSL 5 BASIC5.58□□□□□ -1.52
SDC1P18827 FTO-202ENST00000431610 707 ntTSL 3 BASIC5.58□□□□□ -1.52
SDC1P18827 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SDC1P18827 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.58□□□□□ -1.52
SDC1P18827 AL138921.1-201ENST00000444359 846 ntTSL 5 BASIC5.58□□□□□ -1.52
SDC1P18827 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC5.58□□□□□ -1.52
SDC1P18827 AC097463.1-201ENST00000447288 481 ntBASIC5.58□□□□□ -1.52
SDC1P18827 OR52I1-201ENST00000450052 1050 ntBASIC5.58□□□□□ -1.52
SDC1P18827 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
SDC1P18827 AC092865.4-201ENST00000477936 615 ntBASIC5.58□□□□□ -1.52
SDC1P18827 RN7SL284P-201ENST00000498823 275 ntBASIC5.58□□□□□ -1.52
SDC1P18827 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC5.58□□□□□ -1.52
SDC1P18827 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC5.58□□□□□ -1.52
SDC1P18827 AP003033.2-201ENST00000528901 805 ntBASIC5.58□□□□□ -1.52
SDC1P18827 GLYAT-203ENST00000529732 1070 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms