Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC7.68□□□□□ -1.18
HMGB1P09429 AC073916.1-201ENST00000545095 130 ntBASIC7.68□□□□□ -1.18
HMGB1P09429 AL096869.1-201ENST00000557622 559 ntTSL 4 BASIC7.68□□□□□ -1.18
HMGB1P09429 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC7.68□□□□□ -1.18
HMGB1P09429 AC019257.2-201ENST00000605539 497 ntBASIC7.68□□□□□ -1.18
HMGB1P09429 AC015849.2-201ENST00000605738 409 ntBASIC7.68□□□□□ -1.18
HMGB1P09429 CCL15-204ENST00000617897 1073 ntAPPRIS P2 TSL 1 (best) BASIC7.68□□□□□ -1.18
HMGB1P09429 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC7.68□□□□□ -1.18
HMGB1P09429 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC7.68□□□□□ -1.18
HMGB1P09429 SPTY2D1-AS1-206ENST00000636011 853 ntAPPRIS ALT2 TSL 5 BASIC7.68□□□□□ -1.18
HMGB1P09429 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC7.68□□□□□ -1.18
HMGB1P09429 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
HMGB1P09429 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC7.68□□□□□ -1.18
HMGB1P09429 AC232271.1-201ENST00000602455 2715 ntBASIC7.68□□□□□ -1.18
HMGB1P09429 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
HMGB1P09429 LZIC-203ENST00000400903 1405 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
HMGB1P09429 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC7.68□□□□□ -1.18
HMGB1P09429 AC093297.3-201ENST00000607056 2517 ntBASIC7.68□□□□□ -1.18
HMGB1P09429 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC7.67□□□□□ -1.18
HMGB1P09429 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
HMGB1P09429 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
HMGB1P09429 AC022034.1-201ENST00000512867 2156 ntBASIC7.67□□□□□ -1.18
HMGB1P09429 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC7.67□□□□□ -1.18
HMGB1P09429 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
HMGB1P09429 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC7.67□□□□□ -1.18
HMGB1P09429 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
HMGB1P09429 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC7.67□□□□□ -1.18
HMGB1P09429 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
HMGB1P09429 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC7.67□□□□□ -1.18
HMGB1P09429 XAGE3-201ENST00000346279 497 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
HMGB1P09429 RNA5SP308-201ENST00000362532 115 ntBASIC7.67□□□□□ -1.18
HMGB1P09429 PRR9-201ENST00000368744 1229 ntAPPRIS P1 TSL 5 BASIC7.67□□□□□ -1.18
HMGB1P09429 PAGE2-201ENST00000374965 456 ntTSL 2 BASIC7.67□□□□□ -1.18
HMGB1P09429 VDAC2P1-201ENST00000399358 958 ntBASIC7.67□□□□□ -1.18
HMGB1P09429 RPL12P23-201ENST00000405880 490 ntBASIC7.67□□□□□ -1.18
HMGB1P09429 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC7.67□□□□□ -1.18
HMGB1P09429 AC105402.1-201ENST00000413336 545 ntBASIC7.67□□□□□ -1.18
HMGB1P09429 MTND2P12-201ENST00000417560 1252 ntBASIC7.67□□□□□ -1.18
HMGB1P09429 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC7.67□□□□□ -1.18
HMGB1P09429 AC092106.2-201ENST00000436597 487 ntBASIC7.67□□□□□ -1.18
HMGB1P09429 AC083855.1-201ENST00000440041 258 ntBASIC7.67□□□□□ -1.18
HMGB1P09429 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC7.67□□□□□ -1.18
HMGB1P09429 AL020997.1-201ENST00000446554 349 ntBASIC7.67□□□□□ -1.18
HMGB1P09429 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC7.67□□□□□ -1.18
HMGB1P09429 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC7.67□□□□□ -1.18
HMGB1P09429 SNX18P26-201ENST00000458433 740 ntBASIC7.67□□□□□ -1.18
HMGB1P09429 RN7SL83P-201ENST00000468131 297 ntBASIC7.67□□□□□ -1.18
HMGB1P09429 AC022206.1-201ENST00000495947 347 ntBASIC7.67□□□□□ -1.18
HMGB1P09429 NPM1P27-201ENST00000502784 830 ntBASIC7.67□□□□□ -1.18
HMGB1P09429 RNA5SP228-201ENST00000516232 133 ntBASIC7.67□□□□□ -1.18
HMGB1P09429 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
HMGB1P09429 IGKV1D-22-201ENST00000518953 324 ntBASIC7.67□□□□□ -1.18
HMGB1P09429 AC084851.2-201ENST00000530377 364 ntBASIC7.67□□□□□ -1.18
HMGB1P09429 LINC02454-201ENST00000539116 589 ntTSL 4 BASIC7.67□□□□□ -1.18
HMGB1P09429 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC7.67□□□□□ -1.18
HMGB1P09429 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC7.67□□□□□ -1.18
HMGB1P09429 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC7.67□□□□□ -1.18
HMGB1P09429 AC004805.3-201ENST00000603178 310 ntBASIC7.67□□□□□ -1.18
HMGB1P09429 LINC01320-206ENST00000607437 528 ntTSL 5 BASIC7.67□□□□□ -1.18
HMGB1P09429 U91328.4-201ENST00000608919 517 ntBASIC7.67□□□□□ -1.18
HMGB1P09429 AC011472.4-201ENST00000615848 491 ntBASIC7.67□□□□□ -1.18
HMGB1P09429 AC007671.1-201ENST00000616957 830 ntBASIC7.67□□□□□ -1.18
HMGB1P09429 AP004607.9-201ENST00000618202 316 ntBASIC7.67□□□□□ -1.18
HMGB1P09429 MIR6085-201ENST00000618314 110 ntBASIC7.67□□□□□ -1.18
HMGB1P09429 VIPR1-AS1-221ENST00000626992 602 ntTSL 5 BASIC7.67□□□□□ -1.18
HMGB1P09429 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC7.67□□□□□ -1.18
HMGB1P09429 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC7.67□□□□□ -1.18
HMGB1P09429 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC7.67□□□□□ -1.18
HMGB1P09429 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC7.67□□□□□ -1.18
HMGB1P09429 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC7.67□□□□□ -1.18
HMGB1P09429 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC7.67□□□□□ -1.18
HMGB1P09429 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
HMGB1P09429 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC7.67□□□□□ -1.18
HMGB1P09429 RASGEF1B-214ENST00000638048 2386 ntTSL 5 BASIC7.67□□□□□ -1.18
HMGB1P09429 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
HMGB1P09429 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC7.67□□□□□ -1.18
HMGB1P09429 FTO-215ENST00000636491 1676 ntTSL 5 BASIC7.67□□□□□ -1.18
HMGB1P09429 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
HMGB1P09429 SMG1P5-202ENST00000529428 4219 ntBASIC7.67□□□□□ -1.18
HMGB1P09429 SMG1P2-201ENST00000566127 4221 ntBASIC7.67□□□□□ -1.18
HMGB1P09429 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC7.66□□□□□ -1.18
HMGB1P09429 AC110373.1-201ENST00000505994 3505 ntBASIC7.66□□□□□ -1.18
HMGB1P09429 LRRC37A16P-202ENST00000586022 3725 ntBASIC7.66□□□□□ -1.18
HMGB1P09429 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC7.66□□□□□ -1.18
HMGB1P09429 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC7.66□□□□□ -1.18
HMGB1P09429 AC009779.8-201ENST00000641684 4384 ntBASIC7.66□□□□□ -1.18
HMGB1P09429 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC7.66□□□□□ -1.18
HMGB1P09429 OPALIN-201ENST00000371172 3557 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
HMGB1P09429 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC7.66□□□□□ -1.18
HMGB1P09429 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC7.66□□□□□ -1.18
HMGB1P09429 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC7.66□□□□□ -1.18
HMGB1P09429 AC093719.1-202ENST00000392735 373 ntBASIC7.66□□□□□ -1.18
HMGB1P09429 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC7.66□□□□□ -1.18
HMGB1P09429 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC7.66□□□□□ -1.18
HMGB1P09429 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC7.66□□□□□ -1.18
HMGB1P09429 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC7.66□□□□□ -1.18
HMGB1P09429 RPL6P29-201ENST00000414863 865 ntBASIC7.66□□□□□ -1.18
HMGB1P09429 HNRNPA1P18-201ENST00000433537 927 ntBASIC7.66□□□□□ -1.18
HMGB1P09429 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC7.66□□□□□ -1.18
HMGB1P09429 AC234771.4-201ENST00000441416 730 ntBASIC7.66□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 115.6 ms