Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
LMX1BO60663 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
LMX1BO60663 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC5.41□□□□□ -1.54
LMX1BO60663 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
LMX1BO60663 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.41□□□□□ -1.54
LMX1BO60663 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC5.41□□□□□ -1.54
LMX1BO60663 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
LMX1BO60663 AL133243.2-201ENST00000610331 1621 ntBASIC5.41□□□□□ -1.54
LMX1BO60663 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.41□□□□□ -1.54
LMX1BO60663 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
LMX1BO60663 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC5.4□□□□□ -1.54
LMX1BO60663 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
LMX1BO60663 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
LMX1BO60663 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC5.4□□□□□ -1.54
LMX1BO60663 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.4□□□□□ -1.54
LMX1BO60663 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC5.4□□□□□ -1.54
LMX1BO60663 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
LMX1BO60663 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
LMX1BO60663 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
LMX1BO60663 COX6B1P3-201ENST00000312310 260 ntBASIC5.4□□□□□ -1.54
LMX1BO60663 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
LMX1BO60663 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC5.4□□□□□ -1.54
LMX1BO60663 RNU4-23P-201ENST00000362839 140 ntBASIC5.4□□□□□ -1.54
LMX1BO60663 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC5.4□□□□□ -1.54
LMX1BO60663 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.54
LMX1BO60663 AL139805.1-201ENST00000407837 289 ntBASIC5.4□□□□□ -1.54
LMX1BO60663 RN7SKP151-201ENST00000410230 316 ntBASIC5.4□□□□□ -1.54
LMX1BO60663 AL035422.1-201ENST00000414193 397 ntBASIC5.4□□□□□ -1.54
LMX1BO60663 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
LMX1BO60663 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC5.4□□□□□ -1.54
LMX1BO60663 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.54
LMX1BO60663 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC5.4□□□□□ -1.54
LMX1BO60663 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC5.4□□□□□ -1.54
LMX1BO60663 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC5.4□□□□□ -1.54
LMX1BO60663 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
LMX1BO60663 AC016908.1-201ENST00000442571 1219 ntBASIC5.4□□□□□ -1.54
LMX1BO60663 GXYLT1P1-201ENST00000446657 490 ntBASIC5.4□□□□□ -1.54
LMX1BO60663 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC5.4□□□□□ -1.54
LMX1BO60663 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC5.4□□□□□ -1.54
LMX1BO60663 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
LMX1BO60663 AC068228.1-201ENST00000461723 211 ntBASIC5.4□□□□□ -1.54
LMX1BO60663 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC5.4□□□□□ -1.54
LMX1BO60663 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
LMX1BO60663 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC5.4□□□□□ -1.54
LMX1BO60663 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC5.4□□□□□ -1.54
LMX1BO60663 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC5.4□□□□□ -1.54
LMX1BO60663 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC5.4□□□□□ -1.54
LMX1BO60663 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC5.4□□□□□ -1.54
LMX1BO60663 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC5.4□□□□□ -1.54
LMX1BO60663 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC5.4□□□□□ -1.54
LMX1BO60663 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC5.4□□□□□ -1.54
LMX1BO60663 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC5.4□□□□□ -1.54
LMX1BO60663 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC5.4□□□□□ -1.54
LMX1BO60663 AL158211.1-201ENST00000566763 763 ntBASIC5.4□□□□□ -1.54
LMX1BO60663 GLYATL1P2-202ENST00000588046 902 ntBASIC5.4□□□□□ -1.54
LMX1BO60663 AC020916.2-201ENST00000591242 360 ntBASIC5.4□□□□□ -1.54
LMX1BO60663 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC5.4□□□□□ -1.54
LMX1BO60663 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC5.4□□□□□ -1.54
LMX1BO60663 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC5.4□□□□□ -1.54
LMX1BO60663 OR7E91P-202ENST00000642062 1198 ntBASIC5.4□□□□□ -1.54
LMX1BO60663 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.55
LMX1BO60663 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC5.4□□□□□ -1.55
LMX1BO60663 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC5.4□□□□□ -1.55
LMX1BO60663 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC5.4□□□□□ -1.55
LMX1BO60663 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC5.4□□□□□ -1.55
LMX1BO60663 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC5.39□□□□□ -1.55
LMX1BO60663 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
LMX1BO60663 AC007159.1-201ENST00000566529 4706 ntBASIC5.39□□□□□ -1.55
LMX1BO60663 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC5.39□□□□□ -1.55
LMX1BO60663 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC5.39□□□□□ -1.55
LMX1BO60663 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
LMX1BO60663 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC5.39□□□□□ -1.55
LMX1BO60663 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
LMX1BO60663 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
LMX1BO60663 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC5.39□□□□□ -1.55
LMX1BO60663 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
LMX1BO60663 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
LMX1BO60663 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
LMX1BO60663 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
LMX1BO60663 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
LMX1BO60663 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC5.39□□□□□ -1.55
LMX1BO60663 ATP5A1P4-201ENST00000556888 1605 ntBASIC5.39□□□□□ -1.55
LMX1BO60663 CASC19-246ENST00000641625 1606 ntBASIC5.39□□□□□ -1.55
LMX1BO60663 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
LMX1BO60663 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
LMX1BO60663 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
LMX1BO60663 AC023490.2-201ENST00000359859 470 ntBASIC5.39□□□□□ -1.55
LMX1BO60663 GABARAPL3-201ENST00000412799 354 ntBASIC5.39□□□□□ -1.55
LMX1BO60663 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC5.39□□□□□ -1.55
LMX1BO60663 IPPKP1-201ENST00000422501 768 ntBASIC5.39□□□□□ -1.55
LMX1BO60663 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
LMX1BO60663 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC5.39□□□□□ -1.55
LMX1BO60663 AL590762.3-201ENST00000436372 640 ntBASIC5.39□□□□□ -1.55
LMX1BO60663 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC5.39□□□□□ -1.55
LMX1BO60663 SCAND3P1-201ENST00000439854 1060 ntBASIC5.39□□□□□ -1.55
LMX1BO60663 AL136455.1-201ENST00000441083 1240 ntBASIC5.39□□□□□ -1.55
LMX1BO60663 AC010240.2-201ENST00000445363 1205 ntBASIC5.39□□□□□ -1.55
LMX1BO60663 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC5.39□□□□□ -1.55
LMX1BO60663 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC5.39□□□□□ -1.55
LMX1BO60663 RN7SL369P-201ENST00000477138 299 ntBASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms