Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
VPS39Q96JC1 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC6.04□□□□□ -1.44
VPS39Q96JC1 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC6.04□□□□□ -1.44
VPS39Q96JC1 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
VPS39Q96JC1 CR383656.5-201ENST00000547616 1340 ntBASIC6.04□□□□□ -1.44
VPS39Q96JC1 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
VPS39Q96JC1 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
VPS39Q96JC1 Z83820.1-201ENST00000456978 1499 ntBASIC6.04□□□□□ -1.44
VPS39Q96JC1 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
VPS39Q96JC1 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
VPS39Q96JC1 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC6.04□□□□□ -1.44
VPS39Q96JC1 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
VPS39Q96JC1 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC6.04□□□□□ -1.44
VPS39Q96JC1 LINC01728-201ENST00000428529 524 ntTSL 2 BASIC6.04□□□□□ -1.44
VPS39Q96JC1 CCNB1IP1P1-201ENST00000428976 839 ntBASIC6.04□□□□□ -1.44
VPS39Q96JC1 FTLP19-201ENST00000433300 394 ntBASIC6.04□□□□□ -1.44
VPS39Q96JC1 AL354893.1-201ENST00000433735 348 ntBASIC6.04□□□□□ -1.44
VPS39Q96JC1 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC6.04□□□□□ -1.44
VPS39Q96JC1 CUBNP2-201ENST00000443534 1139 ntBASIC6.04□□□□□ -1.44
VPS39Q96JC1 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC6.04□□□□□ -1.44
VPS39Q96JC1 snoU13.29-201ENST00000459370 104 ntBASIC6.04□□□□□ -1.44
VPS39Q96JC1 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC6.04□□□□□ -1.44
VPS39Q96JC1 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC6.04□□□□□ -1.44
VPS39Q96JC1 AC095052.1-201ENST00000509955 863 ntBASIC6.04□□□□□ -1.44
VPS39Q96JC1 AC026782.2-201ENST00000510845 636 ntBASIC6.04□□□□□ -1.44
VPS39Q96JC1 TOMM22P4-201ENST00000511318 336 ntBASIC6.04□□□□□ -1.44
VPS39Q96JC1 AC138517.1-201ENST00000515724 568 ntBASIC6.04□□□□□ -1.44
VPS39Q96JC1 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC6.04□□□□□ -1.44
VPS39Q96JC1 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC6.04□□□□□ -1.44
VPS39Q96JC1 MTND2P17-201ENST00000550281 688 ntBASIC6.04□□□□□ -1.44
VPS39Q96JC1 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC6.04□□□□□ -1.44
VPS39Q96JC1 AC005632.2-201ENST00000564271 828 ntBASIC6.04□□□□□ -1.44
VPS39Q96JC1 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC6.04□□□□□ -1.44
VPS39Q96JC1 AC011891.2-201ENST00000604949 397 ntBASIC6.04□□□□□ -1.44
VPS39Q96JC1 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC6.04□□□□□ -1.44
VPS39Q96JC1 NQO2-209ENST00000606474 470 ntTSL 3 BASIC6.04□□□□□ -1.44
VPS39Q96JC1 AC007603.3-201ENST00000636915 979 ntBASIC6.04□□□□□ -1.44
VPS39Q96JC1 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC6.04□□□□□ -1.44
VPS39Q96JC1 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
VPS39Q96JC1 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC6.04□□□□□ -1.44
VPS39Q96JC1 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC6.04□□□□□ -1.44
VPS39Q96JC1 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC6.04□□□□□ -1.44
VPS39Q96JC1 AL121839.2-201ENST00000565058 6943 ntBASIC6.04□□□□□ -1.44
VPS39Q96JC1 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
VPS39Q96JC1 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
VPS39Q96JC1 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
VPS39Q96JC1 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
VPS39Q96JC1 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
VPS39Q96JC1 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
VPS39Q96JC1 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC6.04□□□□□ -1.44
VPS39Q96JC1 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC6.03□□□□□ -1.44
VPS39Q96JC1 AL161756.3-201ENST00000641216 2071 ntBASIC6.03□□□□□ -1.44
VPS39Q96JC1 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC6.03□□□□□ -1.44
VPS39Q96JC1 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
VPS39Q96JC1 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
VPS39Q96JC1 TMEM31-201ENST00000319560 728 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
VPS39Q96JC1 RNU105B-201ENST00000364478 208 ntBASIC6.03□□□□□ -1.44
VPS39Q96JC1 CRP-204ENST00000368112 787 ntTSL 2 BASIC6.03□□□□□ -1.44
VPS39Q96JC1 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
VPS39Q96JC1 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC6.03□□□□□ -1.44
VPS39Q96JC1 TPT1-204ENST00000379060 764 ntTSL 5 BASIC6.03□□□□□ -1.44
VPS39Q96JC1 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
VPS39Q96JC1 C2orf88-202ENST00000396974 998 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.44
VPS39Q96JC1 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
VPS39Q96JC1 MYL6P5-201ENST00000412707 459 ntBASIC6.03□□□□□ -1.44
VPS39Q96JC1 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC6.03□□□□□ -1.44
VPS39Q96JC1 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC6.03□□□□□ -1.44
VPS39Q96JC1 Z82198.3-201ENST00000421145 199 ntBASIC6.03□□□□□ -1.44
VPS39Q96JC1 OR5W1P-201ENST00000423705 938 ntBASIC6.03□□□□□ -1.44
VPS39Q96JC1 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC6.03□□□□□ -1.44
VPS39Q96JC1 HNRNPA1P18-201ENST00000433537 927 ntBASIC6.03□□□□□ -1.44
VPS39Q96JC1 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC6.03□□□□□ -1.44
VPS39Q96JC1 AC073410.1-201ENST00000435125 589 ntBASIC6.03□□□□□ -1.44
VPS39Q96JC1 AC004890.1-201ENST00000461005 181 ntBASIC6.03□□□□□ -1.44
VPS39Q96JC1 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC6.03□□□□□ -1.44
VPS39Q96JC1 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC6.03□□□□□ -1.44
VPS39Q96JC1 IGHV7-34-1-201ENST00000519200 350 ntBASIC6.03□□□□□ -1.44
VPS39Q96JC1 OR56A7P-201ENST00000524865 941 ntBASIC6.03□□□□□ -1.44
VPS39Q96JC1 AC021269.1-201ENST00000526860 705 ntBASIC6.03□□□□□ -1.44
VPS39Q96JC1 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC6.03□□□□□ -1.44
VPS39Q96JC1 RAB30-209ENST00000532548 644 ntTSL 3 BASIC6.03□□□□□ -1.44
VPS39Q96JC1 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC6.03□□□□□ -1.44
VPS39Q96JC1 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC6.03□□□□□ -1.44
VPS39Q96JC1 NPM1P42-201ENST00000560329 862 ntBASIC6.03□□□□□ -1.44
VPS39Q96JC1 MIR4420-201ENST00000583944 77 ntBASIC6.03□□□□□ -1.44
VPS39Q96JC1 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC6.03□□□□□ -1.44
VPS39Q96JC1 AC119403.2-201ENST00000590960 598 ntBASIC6.03□□□□□ -1.44
VPS39Q96JC1 AC005479.3-201ENST00000602790 431 ntBASIC6.03□□□□□ -1.44
VPS39Q96JC1 AC087468.1-201ENST00000604365 630 ntBASIC6.03□□□□□ -1.44
VPS39Q96JC1 OSTC-205ENST00000613215 876 ntTSL 2 BASIC6.03□□□□□ -1.44
VPS39Q96JC1 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC6.03□□□□□ -1.44
VPS39Q96JC1 SCRN1-210ENST00000631335 423 ntTSL 5 BASIC6.03□□□□□ -1.44
VPS39Q96JC1 THAP12P9-201ENST00000503971 2360 ntBASIC6.03□□□□□ -1.44
VPS39Q96JC1 LINC01613-201ENST00000561476 2780 ntBASIC6.03□□□□□ -1.44
VPS39Q96JC1 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC6.03□□□□□ -1.44
VPS39Q96JC1 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC6.03□□□□□ -1.44
VPS39Q96JC1 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC6.03□□□□□ -1.44
VPS39Q96JC1 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
VPS39Q96JC1 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC6.02□□□□□ -1.44
VPS39Q96JC1 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC6.02□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms