Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 RNU1-106P-201ENST00000384382 164 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AL139415.1-201ENST00000424862 352 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 RPL21P133-201ENST00000443666 476 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 MORF4-201ENST00000447135 971 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 RN7SL466P-201ENST00000497546 295 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 SNORA58-201ENST00000505219 137 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC022919.1-201ENST00000624979 626 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 KIAA1024-201ENST00000305428 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 MARK2P4-201ENST00000503381 2380 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC011416.1-201ENST00000514947 1732 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 RNA5SP242-201ENST00000364171 118 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC096537.2-201ENST00000413707 714 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 PPIAP10-201ENST00000438675 458 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC073594.1-201ENST00000462065 364 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 ASB8-215ENST00000540782 659 ntTSL 3 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC005736.2-201ENST00000571302 774 ntTSL 2 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 SNORA70D-201ENST00000578836 135 ntBASIC1.85□□□□□ -2.11
SYNE1Q8NF91 HCG18-243ENST00000602498 327 ntTSL 3 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 FAM111B-201ENST00000343597 3488 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
SYNE1Q8NF91 LINC01963-201ENST00000562038 3148 ntBASIC1.84□□□□□ -2.11
SYNE1Q8NF91 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AC135068.1-201ENST00000332663 1084 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 NANOGP4-201ENST00000427230 913 ntBASIC1.84□□□□□ -2.11
SYNE1Q8NF91 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 PTTG3P-201ENST00000521862 606 ntBASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AC010401.2-202ENST00000570663 396 ntTSL 2 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 OR7A11P-201ENST00000597719 953 ntBASIC1.84□□□□□ -2.11
SYNE1Q8NF91 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AL589674.2-201ENST00000604304 337 ntBASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AL596448.1-201ENST00000415024 392 ntBASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 EIF4A2P5-201ENST00000529914 499 ntBASIC1.84□□□□□ -2.11
SYNE1Q8NF91 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 ERC1-204ENST00000397203 9118 ntTSL 5 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AC010168.2-201ENST00000562691 5428 ntBASIC1.84□□□□□ -2.11
SYNE1Q8NF91 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 RNU1-134P-201ENST00000362935 165 ntBASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AL445222.1-201ENST00000607259 628 ntBASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AL137067.2-201ENST00000621202 131 ntBASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AC069234.4-201ENST00000621276 412 ntBASIC1.84□□□□□ -2.11
SYNE1Q8NF91 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AC018765.1-201ENST00000623357 3446 ntBASIC1.84□□□□□ -2.11
SYNE1Q8NF91 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AP004607.3-201ENST00000530354 3915 ntBASIC1.84□□□□□ -2.11
SYNE1Q8NF91 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AC083899.1-201ENST00000454465 3819 ntBASIC1.84□□□□□ -2.11
SYNE1Q8NF91 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 RPL23AP85-201ENST00000421838 433 ntBASIC1.84□□□□□ -2.11
SYNE1Q8NF91 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AC093166.4-201ENST00000457867 318 ntBASIC1.84□□□□□ -2.11
SYNE1Q8NF91 AC078785.1-205ENST00000491578 482 ntTSL 4 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
SYNE1Q8NF91 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms