Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AK6-203ENST00000502819 743 ntTSL 5 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 AC018797.1-201ENST00000510791 255 ntBASIC5.39□□□□□ -1.55
SKA3Q8IX90 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 MAST4-IT1-201ENST00000514241 658 ntBASIC5.39□□□□□ -1.55
SKA3Q8IX90 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 AF117829.1-205ENST00000524190 383 ntTSL 3 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 AC021269.1-201ENST00000526860 705 ntBASIC5.39□□□□□ -1.55
SKA3Q8IX90 WDR61-205ENST00000558459 884 ntTSL 3 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 MRPS21P8-201ENST00000569196 235 ntBASIC5.39□□□□□ -1.55
SKA3Q8IX90 MIR4433B-201ENST00000581329 102 ntBASIC5.39□□□□□ -1.55
SKA3Q8IX90 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 AC025857.2-201ENST00000602711 238 ntBASIC5.39□□□□□ -1.55
SKA3Q8IX90 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 AC141002.1-201ENST00000607025 279 ntBASIC5.39□□□□□ -1.55
SKA3Q8IX90 AL359091.2-201ENST00000609303 556 ntBASIC5.39□□□□□ -1.55
SKA3Q8IX90 RFPL4AP6-201ENST00000616792 846 ntBASIC5.39□□□□□ -1.55
SKA3Q8IX90 AL357140.4-201ENST00000636827 412 ntBASIC5.39□□□□□ -1.55
SKA3Q8IX90 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SKA3Q8IX90 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SKA3Q8IX90 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 AC010266.2-201ENST00000564741 3255 ntBASIC5.39□□□□□ -1.55
SKA3Q8IX90 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
SKA3Q8IX90 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.38□□□□□ -1.55
SKA3Q8IX90 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.38□□□□□ -1.55
SKA3Q8IX90 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.38□□□□□ -1.55
SKA3Q8IX90 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.38□□□□□ -1.55
SKA3Q8IX90 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
SKA3Q8IX90 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SKA3Q8IX90 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SKA3Q8IX90 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
SKA3Q8IX90 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SKA3Q8IX90 RNA5SP110-201ENST00000362638 115 ntBASIC5.38□□□□□ -1.55
SKA3Q8IX90 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC5.38□□□□□ -1.55
SKA3Q8IX90 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
SKA3Q8IX90 RN7SKP151-201ENST00000410230 316 ntBASIC5.38□□□□□ -1.55
SKA3Q8IX90 RNA5SP156-201ENST00000410250 110 ntBASIC5.38□□□□□ -1.55
SKA3Q8IX90 SMC4P1-201ENST00000414479 527 ntBASIC5.38□□□□□ -1.55
SKA3Q8IX90 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC5.38□□□□□ -1.55
SKA3Q8IX90 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC5.38□□□□□ -1.55
SKA3Q8IX90 AL354707.3-201ENST00000427308 331 ntBASIC5.38□□□□□ -1.55
SKA3Q8IX90 AL354893.1-201ENST00000433735 348 ntBASIC5.38□□□□□ -1.55
SKA3Q8IX90 CLNS1AP1-201ENST00000435954 682 ntBASIC5.38□□□□□ -1.55
SKA3Q8IX90 CYCSP51-201ENST00000443545 318 ntBASIC5.38□□□□□ -1.55
SKA3Q8IX90 HCG14-201ENST00000444986 413 ntTSL 2 BASIC5.38□□□□□ -1.55
SKA3Q8IX90 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC5.38□□□□□ -1.55
SKA3Q8IX90 HMGB1P7-201ENST00000450921 612 ntBASIC5.38□□□□□ -1.55
SKA3Q8IX90 RN7SL254P-201ENST00000460609 284 ntBASIC5.38□□□□□ -1.55
SKA3Q8IX90 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC5.38□□□□□ -1.55
SKA3Q8IX90 RNA5SP434-201ENST00000516647 121 ntBASIC5.38□□□□□ -1.55
SKA3Q8IX90 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC5.38□□□□□ -1.55
SKA3Q8IX90 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC5.38□□□□□ -1.55
SKA3Q8IX90 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SKA3Q8IX90 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC5.38□□□□□ -1.55
SKA3Q8IX90 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC5.38□□□□□ -1.55
SKA3Q8IX90 AC019322.1-201ENST00000571869 389 ntBASIC5.38□□□□□ -1.55
SKA3Q8IX90 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC5.38□□□□□ -1.55
SKA3Q8IX90 MIR3154-201ENST00000577829 84 ntBASIC5.38□□□□□ -1.55
SKA3Q8IX90 MIR4701-201ENST00000583094 63 ntBASIC5.38□□□□□ -1.55
SKA3Q8IX90 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC5.38□□□□□ -1.55
SKA3Q8IX90 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC5.38□□□□□ -1.55
SKA3Q8IX90 APOC2-205ENST00000592257 444 ntTSL 3 BASIC5.38□□□□□ -1.55
SKA3Q8IX90 AC027334.1-201ENST00000603257 310 ntBASIC5.38□□□□□ -1.55
SKA3Q8IX90 MIR6780B-201ENST00000610307 79 ntBASIC5.38□□□□□ -1.55
SKA3Q8IX90 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC5.38□□□□□ -1.55
SKA3Q8IX90 RN7SL261P-201ENST00000613441 282 ntBASIC5.38□□□□□ -1.55
SKA3Q8IX90 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC5.38□□□□□ -1.55
SKA3Q8IX90 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC5.38□□□□□ -1.55
SKA3Q8IX90 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SKA3Q8IX90 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC5.38□□□□□ -1.55
SKA3Q8IX90 AC005261.6-201ENST00000623072 1387 ntBASIC5.38□□□□□ -1.55
SKA3Q8IX90 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
SKA3Q8IX90 LINC02019-201ENST00000608605 2060 ntBASIC5.38□□□□□ -1.55
SKA3Q8IX90 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SKA3Q8IX90 AC022325.1-201ENST00000502748 2199 ntBASIC5.38□□□□□ -1.55
SKA3Q8IX90 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
SKA3Q8IX90 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.37□□□□□ -1.55
SKA3Q8IX90 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SKA3Q8IX90 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SKA3Q8IX90 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.37□□□□□ -1.55
SKA3Q8IX90 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SKA3Q8IX90 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
SKA3Q8IX90 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC5.37□□□□□ -1.55
SKA3Q8IX90 GCNT1P4-201ENST00000404096 329 ntBASIC5.37□□□□□ -1.55
SKA3Q8IX90 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC5.37□□□□□ -1.55
SKA3Q8IX90 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.37□□□□□ -1.55
SKA3Q8IX90 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SKA3Q8IX90 RPL7L1P3-201ENST00000455249 689 ntBASIC5.37□□□□□ -1.55
SKA3Q8IX90 AC104339.1-201ENST00000465478 348 ntBASIC5.37□□□□□ -1.55
SKA3Q8IX90 AL355032.1-201ENST00000472981 438 ntBASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms