Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RPL12P24-201ENST00000474907 486 ntBASIC4.39□□□□□ -1.71
FOXA3P55318 EIF3LP3-201ENST00000495197 822 ntBASIC4.39□□□□□ -1.71
FOXA3P55318 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC4.39□□□□□ -1.71
FOXA3P55318 AC093664.1-201ENST00000511779 289 ntBASIC4.39□□□□□ -1.71
FOXA3P55318 AL355075.1-201ENST00000528210 468 ntTSL 2 BASIC4.39□□□□□ -1.71
FOXA3P55318 OLR1-210ENST00000544577 924 ntTSL 5 BASIC4.39□□□□□ -1.71
FOXA3P55318 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC4.39□□□□□ -1.71
FOXA3P55318 AL359219.2-201ENST00000555184 348 ntBASIC4.39□□□□□ -1.71
FOXA3P55318 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC4.39□□□□□ -1.71
FOXA3P55318 DYNLRB2-204ENST00000562982 492 ntTSL 3 BASIC4.39□□□□□ -1.71
FOXA3P55318 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC4.39□□□□□ -1.71
FOXA3P55318 AC126323.5-201ENST00000569913 592 ntTSL 3 BASIC4.39□□□□□ -1.71
FOXA3P55318 RN7SL131P-201ENST00000579043 256 ntBASIC4.39□□□□□ -1.71
FOXA3P55318 RN7SL311P-201ENST00000579858 306 ntBASIC4.39□□□□□ -1.71
FOXA3P55318 SUPT4H1-207ENST00000581540 668 ntTSL 2 BASIC4.39□□□□□ -1.71
FOXA3P55318 AC012254.2-203ENST00000588705 561 ntAPPRIS P5 TSL 2 BASIC4.39□□□□□ -1.71
FOXA3P55318 AC010139.1-201ENST00000596963 445 ntTSL 5 BASIC4.39□□□□□ -1.71
FOXA3P55318 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC4.39□□□□□ -1.71
FOXA3P55318 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC4.39□□□□□ -1.71
FOXA3P55318 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC4.39□□□□□ -1.71
FOXA3P55318 AL445670.1-201ENST00000618889 801 ntBASIC4.39□□□□□ -1.71
FOXA3P55318 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC4.39□□□□□ -1.71
FOXA3P55318 Z95331.1-201ENST00000623075 23112 ntBASIC4.39□□□□□ -1.71
FOXA3P55318 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
FOXA3P55318 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
FOXA3P55318 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
FOXA3P55318 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC4.39□□□□□ -1.71
FOXA3P55318 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
FOXA3P55318 RMST-209ENST00000639542 3269 ntTSL 5 BASIC4.39□□□□□ -1.71
FOXA3P55318 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.39□□□□□ -1.71
FOXA3P55318 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.39□□□□□ -1.71
FOXA3P55318 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
FOXA3P55318 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC4.39□□□□□ -1.71
FOXA3P55318 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
FOXA3P55318 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
FOXA3P55318 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
FOXA3P55318 LINC01808-203ENST00000641932 1643 ntBASIC4.39□□□□□ -1.71
FOXA3P55318 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.38□□□□□ -1.71
FOXA3P55318 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC4.38□□□□□ -1.71
FOXA3P55318 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
FOXA3P55318 ICE2P1-201ENST00000512800 1849 ntBASIC4.38□□□□□ -1.71
FOXA3P55318 U3.7-201ENST00000363668 216 ntBASIC4.38□□□□□ -1.71
FOXA3P55318 RNA5SP279-201ENST00000365513 117 ntBASIC4.38□□□□□ -1.71
FOXA3P55318 RNA5SP211-201ENST00000365516 117 ntBASIC4.38□□□□□ -1.71
FOXA3P55318 AL358178.1-201ENST00000407698 397 ntBASIC4.38□□□□□ -1.71
FOXA3P55318 AC096921.1-201ENST00000411661 375 ntBASIC4.38□□□□□ -1.71
FOXA3P55318 RBMY2JP-201ENST00000425544 1059 ntBASIC4.38□□□□□ -1.71
FOXA3P55318 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC4.38□□□□□ -1.71
FOXA3P55318 RPL3P11-201ENST00000434028 1146 ntBASIC4.38□□□□□ -1.71
FOXA3P55318 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC4.38□□□□□ -1.71
FOXA3P55318 LINC01681-201ENST00000439184 760 ntTSL 2 BASIC4.38□□□□□ -1.71
FOXA3P55318 AC019186.1-201ENST00000447019 545 ntTSL 3 BASIC4.38□□□□□ -1.71
FOXA3P55318 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC4.38□□□□□ -1.71
FOXA3P55318 AC138035.1-201ENST00000499986 992 ntTSL 5 BASIC4.38□□□□□ -1.71
FOXA3P55318 SMR3B-202ENST00000504825 489 ntAPPRIS P1 TSL 3 BASIC4.38□□□□□ -1.71
FOXA3P55318 LINC01262-201ENST00000513681 879 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
FOXA3P55318 RNA5SP434-201ENST00000516647 121 ntBASIC4.38□□□□□ -1.71
FOXA3P55318 XAGE1B-205ENST00000518075 472 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
FOXA3P55318 AC023866.2-201ENST00000521378 387 ntTSL 3 BASIC4.38□□□□□ -1.71
FOXA3P55318 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC4.38□□□□□ -1.71
FOXA3P55318 NPIPB14P-203ENST00000532298 987 ntBASIC4.38□□□□□ -1.71
FOXA3P55318 ASB8-202ENST00000535055 657 ntTSL 2 BASIC4.38□□□□□ -1.71
FOXA3P55318 ASB8-203ENST00000535988 679 ntTSL 2 BASIC4.38□□□□□ -1.71
FOXA3P55318 AC117373.1-201ENST00000544036 392 ntTSL 3 BASIC4.38□□□□□ -1.71
FOXA3P55318 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC4.38□□□□□ -1.71
FOXA3P55318 AC126323.4-201ENST00000566935 234 ntBASIC4.38□□□□□ -1.71
FOXA3P55318 MIR3187-201ENST00000583431 70 ntBASIC4.38□□□□□ -1.71
FOXA3P55318 RPL7AP69-201ENST00000595306 806 ntBASIC4.38□□□□□ -1.71
FOXA3P55318 AC092944.2-201ENST00000605443 889 ntBASIC4.38□□□□□ -1.71
FOXA3P55318 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.38□□□□□ -1.71
FOXA3P55318 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC4.38□□□□□ -1.71
FOXA3P55318 MIR6762-201ENST00000613340 86 ntBASIC4.38□□□□□ -1.71
FOXA3P55318 AL353747.4-202ENST00000625787 674 ntTSL 3 BASIC4.38□□□□□ -1.71
FOXA3P55318 AC073488.6-201ENST00000632293 754 ntBASIC4.38□□□□□ -1.71
FOXA3P55318 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC4.38□□□□□ -1.71
FOXA3P55318 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
FOXA3P55318 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
FOXA3P55318 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
FOXA3P55318 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
FOXA3P55318 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
FOXA3P55318 QRSL1P3-201ENST00000552666 1316 ntBASIC4.38□□□□□ -1.71
FOXA3P55318 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC4.38□□□□□ -1.71
FOXA3P55318 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
FOXA3P55318 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
FOXA3P55318 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
FOXA3P55318 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
FOXA3P55318 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC4.38□□□□□ -1.71
FOXA3P55318 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
FOXA3P55318 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
FOXA3P55318 CTXN3-201ENST00000379445 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
FOXA3P55318 EEF1A1P14-201ENST00000421195 1376 ntBASIC4.38□□□□□ -1.71
FOXA3P55318 EEF1A1P33-201ENST00000554413 1362 ntBASIC4.38□□□□□ -1.71
FOXA3P55318 AC093591.2-201ENST00000565254 3843 ntBASIC4.38□□□□□ -1.71
FOXA3P55318 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC4.38□□□□□ -1.71
FOXA3P55318 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
FOXA3P55318 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
FOXA3P55318 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC4.38□□□□□ -1.71
FOXA3P55318 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC4.37□□□□□ -1.71
FOXA3P55318 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
FOXA3P55318 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms