Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 NREP-223ENST00000515855 801 ntTSL 4 BASIC7.7□□□□□ -1.18
HMGB1P09429 AC026688.1-201ENST00000520639 1168 ntBASIC7.7□□□□□ -1.18
HMGB1P09429 C5orf58-205ENST00000524171 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC7.7□□□□□ -1.18
HMGB1P09429 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC7.7□□□□□ -1.18
HMGB1P09429 AC068714.1-201ENST00000559623 800 ntBASIC7.7□□□□□ -1.18
HMGB1P09429 OR4C49P-201ENST00000563891 900 ntBASIC7.7□□□□□ -1.18
HMGB1P09429 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC7.7□□□□□ -1.18
HMGB1P09429 BMS1P14-201ENST00000615056 606 ntTSL 5 BASIC7.7□□□□□ -1.18
HMGB1P09429 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
HMGB1P09429 AL078581.3-201ENST00000627304 744 ntTSL 5 BASIC7.7□□□□□ -1.18
HMGB1P09429 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC7.7□□□□□ -1.18
HMGB1P09429 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC7.7□□□□□ -1.18
HMGB1P09429 AC006213.6-201ENST00000623722 4179 ntBASIC7.7□□□□□ -1.18
HMGB1P09429 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC7.7□□□□□ -1.18
HMGB1P09429 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC7.7□□□□□ -1.18
HMGB1P09429 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC7.7□□□□□ -1.18
HMGB1P09429 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC7.7□□□□□ -1.18
HMGB1P09429 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
HMGB1P09429 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC7.69□□□□□ -1.18
HMGB1P09429 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC7.69□□□□□ -1.18
HMGB1P09429 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC7.69□□□□□ -1.18
HMGB1P09429 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC7.69□□□□□ -1.18
HMGB1P09429 BX005019.1-201ENST00000561881 1810 ntBASIC7.69□□□□□ -1.18
HMGB1P09429 AF121898.1-201ENST00000440763 1860 ntTSL 5 BASIC7.69□□□□□ -1.18
HMGB1P09429 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC7.69□□□□□ -1.18
HMGB1P09429 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC7.69□□□□□ -1.18
HMGB1P09429 AC093849.1-201ENST00000563631 2209 ntBASIC7.69□□□□□ -1.18
HMGB1P09429 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC7.69□□□□□ -1.18
HMGB1P09429 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
HMGB1P09429 AC092634.1-201ENST00000366505 199 ntBASIC7.69□□□□□ -1.18
HMGB1P09429 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC7.69□□□□□ -1.18
HMGB1P09429 AC245036.1-201ENST00000391727 309 ntBASIC7.69□□□□□ -1.18
HMGB1P09429 EI24P3-201ENST00000399046 1062 ntBASIC7.69□□□□□ -1.18
HMGB1P09429 CEACAM1-208ENST00000403461 1263 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
HMGB1P09429 AL590609.2-201ENST00000421430 368 ntBASIC7.69□□□□□ -1.18
HMGB1P09429 AL139184.1-202ENST00000422303 222 ntBASIC7.69□□□□□ -1.18
HMGB1P09429 TRAPPC13P1-201ENST00000435991 1062 ntBASIC7.69□□□□□ -1.18
HMGB1P09429 COL11A2P1-205ENST00000441798 676 ntBASIC7.69□□□□□ -1.18
HMGB1P09429 AL133351.3-201ENST00000454998 193 ntBASIC7.69□□□□□ -1.18
HMGB1P09429 HMGB1P4-201ENST00000455362 567 ntBASIC7.69□□□□□ -1.18
HMGB1P09429 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC7.69□□□□□ -1.18
HMGB1P09429 TFP1-201ENST00000460564 572 ntTSL 4 BASIC7.69□□□□□ -1.18
HMGB1P09429 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC7.69□□□□□ -1.18
HMGB1P09429 METTL15P1-201ENST00000481421 1045 ntBASIC7.69□□□□□ -1.18
HMGB1P09429 RN7SL809P-201ENST00000482040 297 ntBASIC7.69□□□□□ -1.18
HMGB1P09429 TFP1-203ENST00000490470 561 ntTSL 4 BASIC7.69□□□□□ -1.18
HMGB1P09429 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC7.69□□□□□ -1.18
HMGB1P09429 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC7.69□□□□□ -1.18
HMGB1P09429 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC7.69□□□□□ -1.18
HMGB1P09429 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC7.69□□□□□ -1.18
HMGB1P09429 APAF1-211ENST00000552268 1143 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
HMGB1P09429 AC092376.1-201ENST00000569677 335 ntTSL 2 BASIC7.69□□□□□ -1.18
HMGB1P09429 AC068408.1-201ENST00000577406 1144 ntBASIC7.69□□□□□ -1.18
HMGB1P09429 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC7.69□□□□□ -1.18
HMGB1P09429 AL591222.2-201ENST00000604443 754 ntBASIC7.69□□□□□ -1.18
HMGB1P09429 AC090525.3-201ENST00000605601 189 ntBASIC7.69□□□□□ -1.18
HMGB1P09429 uc_338.9-201ENST00000617424 182 ntBASIC7.69□□□□□ -1.18
HMGB1P09429 MIR6849-201ENST00000618543 69 ntBASIC7.69□□□□□ -1.18
HMGB1P09429 MRPL57P1-201ENST00000621486 265 ntBASIC7.69□□□□□ -1.18
HMGB1P09429 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC7.69□□□□□ -1.18
HMGB1P09429 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
HMGB1P09429 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
HMGB1P09429 MTND4P21-201ENST00000453886 1357 ntBASIC7.69□□□□□ -1.18
HMGB1P09429 AC012254.3-201ENST00000591183 2117 ntBASIC7.69□□□□□ -1.18
HMGB1P09429 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
HMGB1P09429 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC7.69□□□□□ -1.18
HMGB1P09429 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC7.69□□□□□ -1.18
HMGB1P09429 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
HMGB1P09429 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC7.68□□□□□ -1.18
HMGB1P09429 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC7.68□□□□□ -1.18
HMGB1P09429 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC7.68□□□□□ -1.18
HMGB1P09429 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC7.68□□□□□ -1.18
HMGB1P09429 AC019072.1-201ENST00000604535 1551 ntBASIC7.68□□□□□ -1.18
HMGB1P09429 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC7.68□□□□□ -1.18
HMGB1P09429 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
HMGB1P09429 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC7.68□□□□□ -1.18
HMGB1P09429 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC7.68□□□□□ -1.18
HMGB1P09429 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
HMGB1P09429 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
HMGB1P09429 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
HMGB1P09429 SAMD13-203ENST00000370670 565 ntAPPRIS P1 TSL 4 BASIC7.68□□□□□ -1.18
HMGB1P09429 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
HMGB1P09429 SMARCE1P6-201ENST00000398372 1216 ntBASIC7.68□□□□□ -1.18
HMGB1P09429 RN7SKP205-201ENST00000410999 307 ntBASIC7.68□□□□□ -1.18
HMGB1P09429 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC7.68□□□□□ -1.18
HMGB1P09429 AL158212.1-201ENST00000428766 315 ntTSL 5 BASIC7.68□□□□□ -1.18
HMGB1P09429 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC7.68□□□□□ -1.18
HMGB1P09429 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC7.68□□□□□ -1.18
HMGB1P09429 NPM1P19-201ENST00000450070 712 ntBASIC7.68□□□□□ -1.18
HMGB1P09429 HMGB1P5-202ENST00000451497 985 ntBASIC7.68□□□□□ -1.18
HMGB1P09429 NPM1P9-201ENST00000453156 844 ntBASIC7.68□□□□□ -1.18
HMGB1P09429 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC7.68□□□□□ -1.18
HMGB1P09429 RPL7P48-201ENST00000461513 746 ntBASIC7.68□□□□□ -1.18
HMGB1P09429 AC022415.1-202ENST00000486612 523 ntBASIC7.68□□□□□ -1.18
HMGB1P09429 AC009567.2-201ENST00000502989 349 ntBASIC7.68□□□□□ -1.18
HMGB1P09429 AC093870.1-201ENST00000506837 213 ntBASIC7.68□□□□□ -1.18
HMGB1P09429 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC7.68□□□□□ -1.18
HMGB1P09429 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
HMGB1P09429 AC004923.2-201ENST00000529649 369 ntBASIC7.68□□□□□ -1.18
HMGB1P09429 AC020611.2-201ENST00000535594 671 ntTSL 3 BASIC7.68□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 174 ms