Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC6.04□□□□□ -1.44
VPS35Q96QK1 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC6.04□□□□□ -1.44
VPS35Q96QK1 Z83838.1-202ENST00000456225 839 ntBASIC6.04□□□□□ -1.44
VPS35Q96QK1 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC6.04□□□□□ -1.44
VPS35Q96QK1 PFN2-209ENST00000481275 560 ntTSL 4 BASIC6.04□□□□□ -1.44
VPS35Q96QK1 RBBP4P1-201ENST00000502424 1276 ntBASIC6.04□□□□□ -1.44
VPS35Q96QK1 LSM3P4-201ENST00000502948 309 ntBASIC6.04□□□□□ -1.44
VPS35Q96QK1 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC6.04□□□□□ -1.44
VPS35Q96QK1 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC6.04□□□□□ -1.44
VPS35Q96QK1 AP001804.1-201ENST00000526868 919 ntBASIC6.04□□□□□ -1.44
VPS35Q96QK1 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC6.04□□□□□ -1.44
VPS35Q96QK1 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC6.04□□□□□ -1.44
VPS35Q96QK1 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC6.04□□□□□ -1.44
VPS35Q96QK1 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC6.04□□□□□ -1.44
VPS35Q96QK1 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC6.04□□□□□ -1.44
VPS35Q96QK1 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
VPS35Q96QK1 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
VPS35Q96QK1 AC027334.1-201ENST00000603257 310 ntBASIC6.04□□□□□ -1.44
VPS35Q96QK1 AL049840.6-201ENST00000604583 345 ntBASIC6.04□□□□□ -1.44
VPS35Q96QK1 LSM1P2-201ENST00000604911 322 ntBASIC6.04□□□□□ -1.44
VPS35Q96QK1 AC091167.5-201ENST00000605689 894 ntBASIC6.04□□□□□ -1.44
VPS35Q96QK1 AC244517.3-201ENST00000616254 1235 ntBASIC6.04□□□□□ -1.44
VPS35Q96QK1 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC6.04□□□□□ -1.44
VPS35Q96QK1 AC073488.3-201ENST00000631611 778 ntBASIC6.04□□□□□ -1.44
VPS35Q96QK1 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
VPS35Q96QK1 AL049634.1-201ENST00000453770 1720 ntBASIC6.04□□□□□ -1.44
VPS35Q96QK1 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
VPS35Q96QK1 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
VPS35Q96QK1 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
VPS35Q96QK1 MTCO1P28-201ENST00000574177 1528 ntBASIC6.04□□□□□ -1.44
VPS35Q96QK1 HSPD1P8-201ENST00000400121 1658 ntBASIC6.04□□□□□ -1.44
VPS35Q96QK1 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
VPS35Q96QK1 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
VPS35Q96QK1 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
VPS35Q96QK1 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 ING3-204ENST00000431467 1447 ntTSL 2 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 AC093225.1-201ENST00000506867 1408 ntBASIC6.03□□□□□ -1.44
VPS35Q96QK1 COX6B1P3-201ENST00000312310 260 ntBASIC6.03□□□□□ -1.44
VPS35Q96QK1 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 RNU11-201ENST00000387069 134 ntBASIC6.03□□□□□ -1.44
VPS35Q96QK1 CXADRP1-201ENST00000398098 1095 ntBASIC6.03□□□□□ -1.44
VPS35Q96QK1 RPA3-204ENST00000406109 434 ntTSL 3 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 RNA5SP251-201ENST00000410614 137 ntBASIC6.03□□□□□ -1.44
VPS35Q96QK1 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 AC069154.1-201ENST00000432914 542 ntBASIC6.03□□□□□ -1.44
VPS35Q96QK1 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 HCG14-201ENST00000444986 413 ntTSL 2 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 ZNF619P1-201ENST00000446539 752 ntBASIC6.03□□□□□ -1.44
VPS35Q96QK1 AC016027.4-201ENST00000450866 277 ntBASIC6.03□□□□□ -1.44
VPS35Q96QK1 PPIAP27-201ENST00000453800 265 ntBASIC6.03□□□□□ -1.44
VPS35Q96QK1 AC068228.1-201ENST00000461723 211 ntBASIC6.03□□□□□ -1.44
VPS35Q96QK1 AP002884.1-201ENST00000479691 655 ntBASIC6.03□□□□□ -1.44
VPS35Q96QK1 AC114728.1-201ENST00000488289 483 ntBASIC6.03□□□□□ -1.44
VPS35Q96QK1 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 AC026782.2-201ENST00000510845 636 ntBASIC6.03□□□□□ -1.44
VPS35Q96QK1 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 AP001284.1-201ENST00000528393 2118 ntBASIC6.03□□□□□ -1.44
VPS35Q96QK1 TOMM20P1-201ENST00000534518 427 ntBASIC6.03□□□□□ -1.44
VPS35Q96QK1 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 MED21-206ENST00000546323 575 ntTSL 3 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 AC119403.2-201ENST00000590960 598 ntBASIC6.03□□□□□ -1.44
VPS35Q96QK1 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 AL360012.1-201ENST00000602813 131 ntBASIC6.03□□□□□ -1.44
VPS35Q96QK1 RPL12P48-201ENST00000605620 304 ntBASIC6.03□□□□□ -1.44
VPS35Q96QK1 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
VPS35Q96QK1 CXADRP3-202ENST00000617265 1100 ntBASIC6.03□□□□□ -1.44
VPS35Q96QK1 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
VPS35Q96QK1 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
VPS35Q96QK1 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
VPS35Q96QK1 AC093671.1-201ENST00000624981 2929 ntBASIC6.03□□□□□ -1.44
VPS35Q96QK1 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
VPS35Q96QK1 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
VPS35Q96QK1 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
VPS35Q96QK1 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
VPS35Q96QK1 AL354854.1-201ENST00000455940 1363 ntBASIC6.03□□□□□ -1.44
VPS35Q96QK1 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
VPS35Q96QK1 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 OR4G1P-202ENST00000641173 1788 ntBASIC6.03□□□□□ -1.44
VPS35Q96QK1 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
VPS35Q96QK1 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC6.03□□□□□ -1.44
VPS35Q96QK1 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC6.02□□□□□ -1.44
VPS35Q96QK1 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
VPS35Q96QK1 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms