Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL445687.2-201ENST00000458156 728 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL4A4P53420 RPEP1-201ENST00000504507 658 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC6.26□□□□□ -1.41
COL4A4P53420 OR56A7P-201ENST00000524865 941 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 AP000676.2-201ENST00000529711 301 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 CR383656.6-201ENST00000550518 394 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC6.26□□□□□ -1.41
COL4A4P53420 AP002505.2-201ENST00000623585 696 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 METTL15-211ENST00000634762 718 ntTSL 5 BASIC6.26□□□□□ -1.41
COL4A4P53420 WBP11P1-201ENST00000562560 1931 ntBASIC6.26□□□□□ -1.41
COL4A4P53420 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL4A4P53420 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL4A4P53420 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL4A4P53420 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC6.25□□□□□ -1.41
COL4A4P53420 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
COL4A4P53420 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL4A4P53420 ATP10B-202ENST00000327245 7566 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL4A4P53420 ARHGAP19-202ENST00000358531 5463 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL4A4P53420 AC009962.1-201ENST00000567327 3813 ntBASIC6.25□□□□□ -1.41
COL4A4P53420 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
COL4A4P53420 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL4A4P53420 OR2G6-203ENST00000641804 6084 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
COL4A4P53420 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC6.25□□□□□ -1.41
COL4A4P53420 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
COL4A4P53420 AC005042.1-201ENST00000393397 800 ntBASIC6.25□□□□□ -1.41
COL4A4P53420 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC6.25□□□□□ -1.41
COL4A4P53420 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC6.25□□□□□ -1.41
COL4A4P53420 OR5W1P-201ENST00000423705 938 ntBASIC6.25□□□□□ -1.41
COL4A4P53420 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC6.25□□□□□ -1.41
COL4A4P53420 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC6.25□□□□□ -1.41
COL4A4P53420 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC6.25□□□□□ -1.41
COL4A4P53420 RN7SL30P-201ENST00000488416 306 ntBASIC6.25□□□□□ -1.41
COL4A4P53420 AC147055.3-201ENST00000510547 851 ntBASIC6.25□□□□□ -1.41
COL4A4P53420 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
COL4A4P53420 AC074050.1-201ENST00000563247 211 ntBASIC6.25□□□□□ -1.41
COL4A4P53420 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC6.25□□□□□ -1.41
COL4A4P53420 MIR132-201ENST00000591554 101 ntBASIC6.25□□□□□ -1.41
COL4A4P53420 SUGT1P3-202ENST00000604259 383 ntBASIC6.25□□□□□ -1.41
COL4A4P53420 AL445528.2-201ENST00000620582 470 ntBASIC6.25□□□□□ -1.41
COL4A4P53420 AL390318.1-201ENST00000624564 687 ntBASIC6.25□□□□□ -1.41
COL4A4P53420 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC6.25□□□□□ -1.41
COL4A4P53420 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL4A4P53420 POC1B-AS1-201ENST00000605233 8041 ntTSL 2 BASIC6.25□□□□□ -1.41
COL4A4P53420 TSC1-208ENST00000545250 8310 ntTSL 5 BASIC6.25□□□□□ -1.41
COL4A4P53420 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC6.25□□□□□ -1.41
COL4A4P53420 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC6.25□□□□□ -1.41
COL4A4P53420 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL4A4P53420 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC6.25□□□□□ -1.41
COL4A4P53420 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC6.25□□□□□ -1.41
COL4A4P53420 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC6.25□□□□□ -1.41
COL4A4P53420 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL4A4P53420 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC6.24□□□□□ -1.41
COL4A4P53420 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL4A4P53420 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL4A4P53420 MRE11-201ENST00000323929 6897 ntAPPRIS P3 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL4A4P53420 NSD2-208ENST00000420906 5109 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL4A4P53420 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL4A4P53420 AC005224.3-201ENST00000584683 2140 ntBASIC6.24□□□□□ -1.41
COL4A4P53420 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC6.24□□□□□ -1.41
COL4A4P53420 MRPL53P1-201ENST00000414323 319 ntBASIC6.24□□□□□ -1.41
COL4A4P53420 AC005033.1-201ENST00000428904 813 ntBASIC6.24□□□□□ -1.41
COL4A4P53420 RPS7P3-201ENST00000443360 580 ntBASIC6.24□□□□□ -1.41
COL4A4P53420 SLC25A51P1-201ENST00000468432 871 ntBASIC6.24□□□□□ -1.41
COL4A4P53420 RPL38P3-201ENST00000484463 213 ntBASIC6.24□□□□□ -1.41
COL4A4P53420 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC6.24□□□□□ -1.41
COL4A4P53420 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC6.24□□□□□ -1.41
COL4A4P53420 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC6.24□□□□□ -1.41
COL4A4P53420 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC6.24□□□□□ -1.41
COL4A4P53420 AC012557.1-201ENST00000607115 611 ntBASIC6.24□□□□□ -1.41
COL4A4P53420 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC6.24□□□□□ -1.41
COL4A4P53420 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC6.24□□□□□ -1.41
COL4A4P53420 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL4A4P53420 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL4A4P53420 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL4A4P53420 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
COL4A4P53420 ZNF385D-201ENST00000281523 10699 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL4A4P53420 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC6.24□□□□□ -1.41
COL4A4P53420 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC6.24□□□□□ -1.41
COL4A4P53420 MAVS-201ENST00000416600 11596 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL4A4P53420 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC6.24□□□□□ -1.41
COL4A4P53420 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC6.24□□□□□ -1.41
COL4A4P53420 SGMS2-202ENST00000394684 6149 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL4A4P53420 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC6.24□□□□□ -1.41
COL4A4P53420 AC130304.1-201ENST00000622942 2385 ntBASIC6.24□□□□□ -1.41
COL4A4P53420 SH3D19-203ENST00000409598 5284 ntAPPRIS ALT1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL4A4P53420 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL4A4P53420 GPR161-201ENST00000271357 7806 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL4A4P53420 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC6.23□□□□□ -1.41
COL4A4P53420 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
COL4A4P53420 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
COL4A4P53420 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
COL4A4P53420 RNU1-106P-201ENST00000384382 164 ntBASIC6.23□□□□□ -1.41
COL4A4P53420 MYL6P5-201ENST00000412707 459 ntBASIC6.23□□□□□ -1.41
COL4A4P53420 EIF4A1P7-201ENST00000421800 1220 ntBASIC6.23□□□□□ -1.41
COL4A4P53420 AL133173.1-201ENST00000423458 397 ntBASIC6.23□□□□□ -1.41
COL4A4P53420 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC6.23□□□□□ -1.41
COL4A4P53420 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC6.23□□□□□ -1.41
COL4A4P53420 AC004129.2-201ENST00000457229 287 ntBASIC6.23□□□□□ -1.41
COL4A4P53420 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 148.1 ms