Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RPS21P1-201ENST00000434479 247 ntBASIC6.29□□□□□ -1.4
MSX2P35548 CFAP58-AS1-201ENST00000435434 795 ntTSL 2 BASIC6.29□□□□□ -1.4
MSX2P35548 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC6.29□□□□□ -1.4
MSX2P35548 MED6P1-201ENST00000439659 713 ntBASIC6.29□□□□□ -1.4
MSX2P35548 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC6.29□□□□□ -1.4
MSX2P35548 MTCO2P7-201ENST00000446518 666 ntBASIC6.29□□□□□ -1.4
MSX2P35548 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC6.29□□□□□ -1.4
MSX2P35548 RPL23AP28-201ENST00000448062 470 ntBASIC6.29□□□□□ -1.4
MSX2P35548 GOT2P2-201ENST00000450663 1251 ntBASIC6.29□□□□□ -1.4
MSX2P35548 PCMTD1P3-201ENST00000451824 472 ntBASIC6.29□□□□□ -1.4
MSX2P35548 NMNAT1P3-201ENST00000457517 888 ntBASIC6.29□□□□□ -1.4
MSX2P35548 GAPDHP53-201ENST00000458397 924 ntBASIC6.29□□□□□ -1.4
MSX2P35548 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
MSX2P35548 RN7SL91P-201ENST00000469313 291 ntBASIC6.29□□□□□ -1.4
MSX2P35548 ZNF138-207ENST00000494380 842 ntTSL 2 BASIC6.29□□□□□ -1.4
MSX2P35548 AC134050.1-201ENST00000495088 933 ntBASIC6.29□□□□□ -1.4
MSX2P35548 LAMTOR3P2-201ENST00000504479 232 ntBASIC6.29□□□□□ -1.4
MSX2P35548 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC6.29□□□□□ -1.4
MSX2P35548 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC6.29□□□□□ -1.4
MSX2P35548 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC6.29□□□□□ -1.4
MSX2P35548 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
MSX2P35548 AP003084.1-201ENST00000524828 742 ntBASIC6.29□□□□□ -1.4
MSX2P35548 AC087373.1-201ENST00000524920 491 ntBASIC6.29□□□□□ -1.4
MSX2P35548 AP001803.1-201ENST00000525668 147 ntBASIC6.29□□□□□ -1.4
MSX2P35548 AP005639.1-201ENST00000526939 192 ntBASIC6.29□□□□□ -1.4
MSX2P35548 EBF2-204ENST00000535548 1017 ntTSL 2 BASIC6.29□□□□□ -1.4
MSX2P35548 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSX2P35548 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC6.29□□□□□ -1.4
MSX2P35548 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC6.29□□□□□ -1.4
MSX2P35548 HYKK-205ENST00000566332 1422 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
MSX2P35548 LYRM1-208ENST00000567954 460 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSX2P35548 AC027688.2-201ENST00000569009 511 ntTSL 3 BASIC6.29□□□□□ -1.4
MSX2P35548 AC093503.1-202ENST00000598743 478 ntTSL 5 BASIC6.29□□□□□ -1.4
MSX2P35548 SNX6P1-201ENST00000601728 1224 ntBASIC6.29□□□□□ -1.4
MSX2P35548 AL109653.1-201ENST00000603091 248 ntBASIC6.29□□□□□ -1.4
MSX2P35548 AC093673.2-201ENST00000609674 331 ntBASIC6.29□□□□□ -1.4
MSX2P35548 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC6.29□□□□□ -1.4
MSX2P35548 VN1R9P-201ENST00000614184 867 ntBASIC6.29□□□□□ -1.4
MSX2P35548 AC017037.3-201ENST00000625016 472 ntBASIC6.29□□□□□ -1.4
MSX2P35548 RACK1-235ENST00000626067 564 ntTSL 2 BASIC6.29□□□□□ -1.4
MSX2P35548 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC6.29□□□□□ -1.4
MSX2P35548 FGD6-205ENST00000549499 3757 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
MSX2P35548 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSX2P35548 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC6.29□□□□□ -1.4
MSX2P35548 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC6.29□□□□□ -1.4
MSX2P35548 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC6.29□□□□□ -1.4
MSX2P35548 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSX2P35548 KLHL5-201ENST00000261425 3425 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSX2P35548 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC6.29□□□□□ -1.4
MSX2P35548 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
MSX2P35548 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC6.29□□□□□ -1.4
MSX2P35548 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
MSX2P35548 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC6.28□□□□□ -1.4
MSX2P35548 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC6.28□□□□□ -1.4
MSX2P35548 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC6.28□□□□□ -1.4
MSX2P35548 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
MSX2P35548 NEK2P2-201ENST00000438441 1338 ntBASIC6.28□□□□□ -1.4
MSX2P35548 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
MSX2P35548 NEMP2-202ENST00000409150 6168 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
MSX2P35548 AL731532.1-201ENST00000623972 4236 ntBASIC6.28□□□□□ -1.4
MSX2P35548 NARS2-204ENST00000528850 2137 ntTSL 5 BASIC6.28□□□□□ -1.4
MSX2P35548 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
MSX2P35548 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
MSX2P35548 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC6.28□□□□□ -1.4
MSX2P35548 NDUFB4-201ENST00000184266 671 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
MSX2P35548 OR1I1-201ENST00000209540 1242 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
MSX2P35548 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC6.28□□□□□ -1.4
MSX2P35548 OR4K1-201ENST00000285600 1076 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
MSX2P35548 MAPK14-203ENST00000310795 1066 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
MSX2P35548 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
MSX2P35548 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
MSX2P35548 RNA5SP442-201ENST00000365050 107 ntBASIC6.28□□□□□ -1.4
MSX2P35548 C1orf54-203ENST00000369102 1251 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
MSX2P35548 AC068389.3-201ENST00000373384 529 ntTSL 4 BASIC6.28□□□□□ -1.4
MSX2P35548 SNORD116-4-201ENST00000384733 96 ntBASIC6.28□□□□□ -1.4
MSX2P35548 MIR301B-201ENST00000390813 78 ntBASIC6.28□□□□□ -1.4
MSX2P35548 AL360271.1-201ENST00000395679 510 ntBASIC6.28□□□□□ -1.4
MSX2P35548 AL451046.1-201ENST00000406097 534 ntBASIC6.28□□□□□ -1.4
MSX2P35548 AL049697.3-201ENST00000406493 982 ntBASIC6.28□□□□□ -1.4
MSX2P35548 IFNA12P-201ENST00000413147 571 ntBASIC6.28□□□□□ -1.4
MSX2P35548 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC6.28□□□□□ -1.4
MSX2P35548 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC6.28□□□□□ -1.4
MSX2P35548 RPS26P4-201ENST00000431743 355 ntBASIC6.28□□□□□ -1.4
MSX2P35548 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC6.28□□□□□ -1.4
MSX2P35548 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC6.28□□□□□ -1.4
MSX2P35548 OFD1P7Y-201ENST00000454643 1155 ntBASIC6.28□□□□□ -1.4
MSX2P35548 AC104849.1-201ENST00000462623 405 ntBASIC6.28□□□□□ -1.4
MSX2P35548 RN7SL149P-201ENST00000465197 281 ntBASIC6.28□□□□□ -1.4
MSX2P35548 LINC00881-201ENST00000467995 589 ntTSL 4 BASIC6.28□□□□□ -1.4
MSX2P35548 RN7SL165P-201ENST00000477476 291 ntBASIC6.28□□□□□ -1.4
MSX2P35548 AC022415.1-202ENST00000486612 523 ntBASIC6.28□□□□□ -1.4
MSX2P35548 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
MSX2P35548 AL135933.1-201ENST00000498657 802 ntBASIC6.28□□□□□ -1.4
MSX2P35548 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC6.28□□□□□ -1.4
MSX2P35548 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC6.28□□□□□ -1.4
MSX2P35548 AC090819.1-201ENST00000523800 1111 ntBASIC6.28□□□□□ -1.4
MSX2P35548 AC084337.1-201ENST00000524809 686 ntBASIC6.28□□□□□ -1.4
MSX2P35548 AC005000.1-201ENST00000536192 288 ntBASIC6.28□□□□□ -1.4
MSX2P35548 MAGOHB-204ENST00000539554 666 ntTSL 3 BASIC6.28□□□□□ -1.4
MSX2P35548 AC073916.1-201ENST00000545095 130 ntBASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms