Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC7.22□□□□□ -1.25
COL6A1P12109 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC7.22□□□□□ -1.25
COL6A1P12109 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC7.22□□□□□ -1.25
COL6A1P12109 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC7.22□□□□□ -1.25
COL6A1P12109 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
COL6A1P12109 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL6A1P12109 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL6A1P12109 RN7SKP292-201ENST00000365522 317 ntBASIC7.22□□□□□ -1.25
COL6A1P12109 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
COL6A1P12109 RNU4ATAC2P-201ENST00000408674 126 ntBASIC7.22□□□□□ -1.25
COL6A1P12109 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC7.22□□□□□ -1.25
COL6A1P12109 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC7.22□□□□□ -1.25
COL6A1P12109 LINC01497-201ENST00000420427 665 ntTSL 3 BASIC7.22□□□□□ -1.25
COL6A1P12109 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC7.22□□□□□ -1.25
COL6A1P12109 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC7.22□□□□□ -1.25
COL6A1P12109 MRPL50P1-201ENST00000431951 384 ntBASIC7.22□□□□□ -1.25
COL6A1P12109 BX119917.1-201ENST00000432517 502 ntBASIC7.22□□□□□ -1.25
COL6A1P12109 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
COL6A1P12109 AL512661.1-201ENST00000434586 1253 ntBASIC7.22□□□□□ -1.25
COL6A1P12109 MTND1P33-201ENST00000446251 917 ntBASIC7.22□□□□□ -1.25
COL6A1P12109 DEFA11P-201ENST00000446470 261 ntBASIC7.22□□□□□ -1.25
COL6A1P12109 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC7.22□□□□□ -1.25
COL6A1P12109 AC023141.9-201ENST00000458734 412 ntBASIC7.22□□□□□ -1.25
COL6A1P12109 AC096992.1-201ENST00000459808 709 ntBASIC7.22□□□□□ -1.25
COL6A1P12109 AC020898.1-201ENST00000474167 787 ntBASIC7.22□□□□□ -1.25
COL6A1P12109 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC7.22□□□□□ -1.25
COL6A1P12109 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC7.22□□□□□ -1.25
COL6A1P12109 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC7.22□□□□□ -1.25
COL6A1P12109 AC096736.3-201ENST00000510753 993 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
COL6A1P12109 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC7.22□□□□□ -1.25
COL6A1P12109 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC7.22□□□□□ -1.25
COL6A1P12109 LECT2-203ENST00000512872 762 ntTSL 5 BASIC7.22□□□□□ -1.25
COL6A1P12109 RPL7L1P4-201ENST00000513004 707 ntBASIC7.22□□□□□ -1.25
COL6A1P12109 RNU6-760P-201ENST00000516078 97 ntBASIC7.22□□□□□ -1.25
COL6A1P12109 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC7.22□□□□□ -1.25
COL6A1P12109 EEF1A1P37-201ENST00000522748 715 ntBASIC7.22□□□□□ -1.25
COL6A1P12109 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC7.22□□□□□ -1.25
COL6A1P12109 AC023538.1-201ENST00000534576 736 ntBASIC7.22□□□□□ -1.25
COL6A1P12109 ASB8-215ENST00000540782 659 ntTSL 3 BASIC7.22□□□□□ -1.25
COL6A1P12109 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC7.22□□□□□ -1.25
COL6A1P12109 AC068305.2-201ENST00000550567 1205 ntBASIC7.22□□□□□ -1.25
COL6A1P12109 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC7.22□□□□□ -1.25
COL6A1P12109 MTCYBP28-201ENST00000566728 1132 ntBASIC7.22□□□□□ -1.25
COL6A1P12109 AC138811.1-201ENST00000569096 361 ntTSL 3 BASIC7.22□□□□□ -1.25
COL6A1P12109 AC007346.1-201ENST00000569208 867 ntBASIC7.22□□□□□ -1.25
COL6A1P12109 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC7.22□□□□□ -1.25
COL6A1P12109 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
COL6A1P12109 AC098935.2-201ENST00000604222 466 ntBASIC7.22□□□□□ -1.25
COL6A1P12109 AC073046.2-201ENST00000604756 527 ntBASIC7.22□□□□□ -1.25
COL6A1P12109 SNORA74.4-201ENST00000607595 199 ntBASIC7.22□□□□□ -1.25
COL6A1P12109 MIR6798-201ENST00000612887 67 ntBASIC7.22□□□□□ -1.25
COL6A1P12109 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC7.22□□□□□ -1.25
COL6A1P12109 AC183089.2-201ENST00000637931 916 ntBASIC7.22□□□□□ -1.25
COL6A1P12109 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC7.22□□□□□ -1.25
COL6A1P12109 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
COL6A1P12109 C2CD6-203ENST00000439802 1639 ntAPPRIS ALT2 TSL 2 BASIC7.22□□□□□ -1.25
COL6A1P12109 NBPF26-206ENST00000617913 2931 ntTSL 5 BASIC7.22□□□□□ -1.25
COL6A1P12109 ZNF268-209ENST00000541009 3773 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
COL6A1P12109 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
COL6A1P12109 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC7.22□□□□□ -1.25
COL6A1P12109 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC7.22□□□□□ -1.25
COL6A1P12109 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC7.22□□□□□ -1.25
COL6A1P12109 AC092111.1-201ENST00000618256 3358 ntBASIC7.22□□□□□ -1.25
COL6A1P12109 OPALIN-202ENST00000393870 3578 ntTSL 3 BASIC7.21□□□□□ -1.25
COL6A1P12109 DLC1-215ENST00000520226 3556 ntTSL 2 BASIC7.21□□□□□ -1.25
COL6A1P12109 AC027279.1-201ENST00000568885 4284 ntBASIC7.21□□□□□ -1.25
COL6A1P12109 MEPE-204ENST00000497649 2226 ntAPPRIS ALT2 TSL 5 BASIC7.21□□□□□ -1.25
COL6A1P12109 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC7.21□□□□□ -1.25
COL6A1P12109 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
COL6A1P12109 ST8SIA5-203ENST00000538168 13761 ntTSL 2 BASIC7.21□□□□□ -1.25
COL6A1P12109 POC1B-AS1-201ENST00000605233 8041 ntTSL 2 BASIC7.21□□□□□ -1.25
COL6A1P12109 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC7.21□□□□□ -1.26
COL6A1P12109 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
COL6A1P12109 TRIM55-203ENST00000350034 1177 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
COL6A1P12109 RNU6-609P-201ENST00000365459 107 ntBASIC7.21□□□□□ -1.26
COL6A1P12109 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
COL6A1P12109 U3.25-201ENST00000391209 220 ntBASIC7.21□□□□□ -1.26
COL6A1P12109 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC7.21□□□□□ -1.26
COL6A1P12109 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
COL6A1P12109 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC7.21□□□□□ -1.26
COL6A1P12109 AC112492.2-201ENST00000432774 1030 ntBASIC7.21□□□□□ -1.26
COL6A1P12109 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC7.21□□□□□ -1.26
COL6A1P12109 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC7.21□□□□□ -1.26
COL6A1P12109 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC7.21□□□□□ -1.26
COL6A1P12109 AL445669.2-201ENST00000454425 421 ntBASIC7.21□□□□□ -1.26
COL6A1P12109 MTCYBP14-201ENST00000457471 715 ntBASIC7.21□□□□□ -1.26
COL6A1P12109 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC7.21□□□□□ -1.26
COL6A1P12109 RN7SL717P-201ENST00000478343 297 ntBASIC7.21□□□□□ -1.26
COL6A1P12109 ATG10-AS1-201ENST00000504846 648 ntBASIC7.21□□□□□ -1.26
COL6A1P12109 AC131392.1-201ENST00000506490 633 ntBASIC7.21□□□□□ -1.26
COL6A1P12109 KHDC1P1-201ENST00000511053 508 ntBASIC7.21□□□□□ -1.26
COL6A1P12109 RN7SKP265-201ENST00000516448 223 ntBASIC7.21□□□□□ -1.26
COL6A1P12109 DUXAP5-201ENST00000529668 529 ntBASIC7.21□□□□□ -1.26
COL6A1P12109 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC7.21□□□□□ -1.26
COL6A1P12109 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC7.21□□□□□ -1.26
COL6A1P12109 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC7.21□□□□□ -1.26
COL6A1P12109 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC7.21□□□□□ -1.26
COL6A1P12109 AC090888.2-201ENST00000559765 1144 ntBASIC7.21□□□□□ -1.26
COL6A1P12109 AC087721.1-201ENST00000559959 476 ntTSL 5 BASIC7.21□□□□□ -1.26
COL6A1P12109 OR7E18P-201ENST00000592589 702 ntBASIC7.21□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms