Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RN7SL778P-201ENST00000607160 297 ntBASIC7.4□□□□□ -1.22
LIG3P49916 AC133041.1-201ENST00000608389 201 ntTSL 3 BASIC7.4□□□□□ -1.22
LIG3P49916 AC009237.15-201ENST00000610252 501 ntBASIC7.4□□□□□ -1.22
LIG3P49916 AC097641.3-201ENST00000613523 464 ntBASIC7.4□□□□□ -1.22
LIG3P49916 LINC01742-201ENST00000616333 628 ntTSL 3 BASIC7.4□□□□□ -1.22
LIG3P49916 AL121890.3-201ENST00000618494 516 ntBASIC7.4□□□□□ -1.22
LIG3P49916 pRNA.9-201ENST00000618609 89 ntBASIC7.4□□□□□ -1.22
LIG3P49916 PIGN-207ENST00000586566 3891 ntTSL 5 BASIC7.4□□□□□ -1.22
LIG3P49916 SOS2-202ENST00000543680 3960 ntTSL 1 (best) BASIC7.4□□□□□ -1.22
LIG3P49916 MTND4P26-201ENST00000415971 1359 ntBASIC7.4□□□□□ -1.22
LIG3P49916 AL049737.1-201ENST00000413920 1403 ntBASIC7.4□□□□□ -1.22
LIG3P49916 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.22
LIG3P49916 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC7.4□□□□□ -1.22
LIG3P49916 NOX1-201ENST00000217885 1734 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
LIG3P49916 GPX6-201ENST00000361902 1712 ntAPPRIS P2 TSL 1 (best) BASIC7.4□□□□□ -1.23
LIG3P49916 GPX6-204ENST00000612264 1709 ntAPPRIS ALT1 TSL 5 BASIC7.4□□□□□ -1.23
LIG3P49916 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC7.4□□□□□ -1.23
LIG3P49916 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC7.4□□□□□ -1.23
LIG3P49916 AC022034.1-201ENST00000512867 2156 ntBASIC7.4□□□□□ -1.23
LIG3P49916 SLC26A5-206ENST00000393727 2270 ntAPPRIS ALT1 TSL 1 (best) BASIC7.4□□□□□ -1.23
LIG3P49916 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC7.4□□□□□ -1.23
LIG3P49916 AGBL1-205ENST00000635782 3201 ntAPPRIS P2 TSL 5 BASIC7.4□□□□□ -1.23
LIG3P49916 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
LIG3P49916 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
LIG3P49916 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
LIG3P49916 MAPK10-242ENST00000639242 3088 ntAPPRIS P2 TSL 5 BASIC7.39□□□□□ -1.23
LIG3P49916 SAMD3-203ENST00000437477 2028 ntAPPRIS P1 TSL 5 BASIC7.39□□□□□ -1.23
LIG3P49916 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
LIG3P49916 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC7.39□□□□□ -1.23
LIG3P49916 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC7.39□□□□□ -1.23
LIG3P49916 AL136298.2-201ENST00000556497 1570 ntBASIC7.39□□□□□ -1.23
LIG3P49916 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
LIG3P49916 POGZ-218ENST00000531094 4415 ntAPPRIS ALT1 TSL 2 BASIC7.39□□□□□ -1.23
LIG3P49916 ZNF542P-204ENST00000482727 1305 ntBASIC7.39□□□□□ -1.23
LIG3P49916 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC7.39□□□□□ -1.23
LIG3P49916 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC7.39□□□□□ -1.23
LIG3P49916 CTSL3P-201ENST00000354530 657 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
LIG3P49916 S100A7-202ENST00000368723 479 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
LIG3P49916 FIG4-202ENST00000368941 791 ntTSL 3 BASIC7.39□□□□□ -1.23
LIG3P49916 MIR199B-201ENST00000384849 110 ntBASIC7.39□□□□□ -1.23
LIG3P49916 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
LIG3P49916 AC007068.1-201ENST00000396690 844 ntBASIC7.39□□□□□ -1.23
LIG3P49916 SNRPD3-202ENST00000402849 567 ntTSL 2 BASIC7.39□□□□□ -1.23
LIG3P49916 AL451046.1-201ENST00000406097 534 ntBASIC7.39□□□□□ -1.23
LIG3P49916 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC7.39□□□□□ -1.23
LIG3P49916 EEF1GP7-201ENST00000422983 703 ntBASIC7.39□□□□□ -1.23
LIG3P49916 LINC01980-202ENST00000425195 491 ntTSL 3 BASIC7.39□□□□□ -1.23
LIG3P49916 AC234781.2-201ENST00000426370 994 ntBASIC7.39□□□□□ -1.23
LIG3P49916 CYP4F32P-201ENST00000426492 504 ntBASIC7.39□□□□□ -1.23
LIG3P49916 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC7.39□□□□□ -1.23
LIG3P49916 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC7.39□□□□□ -1.23
LIG3P49916 Z83313.1-201ENST00000433780 718 ntBASIC7.39□□□□□ -1.23
LIG3P49916 Z84478.1-201ENST00000438230 1219 ntBASIC7.39□□□□□ -1.23
LIG3P49916 MTND4P6-201ENST00000438297 472 ntBASIC7.39□□□□□ -1.23
LIG3P49916 PRKAR1AP1-201ENST00000441422 1162 ntBASIC7.39□□□□□ -1.23
LIG3P49916 MTCYBP42-201ENST00000444653 1130 ntBASIC7.39□□□□□ -1.23
LIG3P49916 AL138930.1-201ENST00000446952 635 ntTSL 3 BASIC7.39□□□□□ -1.23
LIG3P49916 AL157827.1-201ENST00000447622 132 ntBASIC7.39□□□□□ -1.23
LIG3P49916 RHEBP1-201ENST00000448647 556 ntBASIC7.39□□□□□ -1.23
LIG3P49916 IGKV1OR2-2-201ENST00000451163 355 ntBASIC7.39□□□□□ -1.23
LIG3P49916 AC009269.1-201ENST00000470368 833 ntTSL 3 BASIC7.39□□□□□ -1.23
LIG3P49916 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
LIG3P49916 AC091860.1-201ENST00000505723 432 ntBASIC7.39□□□□□ -1.23
LIG3P49916 AC008565.1-201ENST00000509046 885 ntBASIC7.39□□□□□ -1.23
LIG3P49916 GCSHP1-201ENST00000512554 484 ntBASIC7.39□□□□□ -1.23
LIG3P49916 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC7.39□□□□□ -1.23
LIG3P49916 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC7.39□□□□□ -1.23
LIG3P49916 LINC00469-203ENST00000579749 583 ntTSL 5 BASIC7.39□□□□□ -1.23
LIG3P49916 AC022662.1-201ENST00000580252 331 ntBASIC7.39□□□□□ -1.23
LIG3P49916 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC7.39□□□□□ -1.23
LIG3P49916 uc_338.21-201ENST00000622458 147 ntBASIC7.39□□□□□ -1.23
LIG3P49916 FKBP1AP4-201ENST00000631775 336 ntBASIC7.39□□□□□ -1.23
LIG3P49916 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
LIG3P49916 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
LIG3P49916 DDX10P2-201ENST00000417796 2614 ntBASIC7.39□□□□□ -1.23
LIG3P49916 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC7.39□□□□□ -1.23
LIG3P49916 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC7.39□□□□□ -1.23
LIG3P49916 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC7.39□□□□□ -1.23
LIG3P49916 SNX25-202ENST00000504273 3323 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
LIG3P49916 AP003471.1-202ENST00000319051 1988 ntBASIC7.39□□□□□ -1.23
LIG3P49916 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC7.39□□□□□ -1.23
LIG3P49916 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
LIG3P49916 LINC01994-201ENST00000496220 1808 ntTSL 2 BASIC7.38□□□□□ -1.23
LIG3P49916 ZNF160-208ENST00000599056 4229 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
LIG3P49916 KARSP1-201ENST00000451871 1752 ntBASIC7.38□□□□□ -1.23
LIG3P49916 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC7.38□□□□□ -1.23
LIG3P49916 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC7.38□□□□□ -1.23
LIG3P49916 PSG6-201ENST00000187910 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC7.38□□□□□ -1.23
LIG3P49916 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
LIG3P49916 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
LIG3P49916 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC7.38□□□□□ -1.23
LIG3P49916 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC7.38□□□□□ -1.23
LIG3P49916 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
LIG3P49916 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
LIG3P49916 LRRC37A15P-201ENST00000514785 1355 ntBASIC7.38□□□□□ -1.23
LIG3P49916 RNGTT-203ENST00000538899 1374 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
LIG3P49916 CEP41-213ENST00000489512 3161 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
LIG3P49916 ZNF402P-201ENST00000404435 3100 ntBASIC7.38□□□□□ -1.23
LIG3P49916 GNG13-201ENST00000248150 984 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
LIG3P49916 CDC40-201ENST00000307731 3848 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms