Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 FRG1EP-201ENST00000634469 770 ntBASIC6.31□□□□□ -1.4
MSX2P35548 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
MSX2P35548 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC6.31□□□□□ -1.4
MSX2P35548 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
MSX2P35548 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
MSX2P35548 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC6.31□□□□□ -1.4
MSX2P35548 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC6.31□□□□□ -1.4
MSX2P35548 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
MSX2P35548 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
MSX2P35548 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC6.31□□□□□ -1.4
MSX2P35548 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC6.31□□□□□ -1.4
MSX2P35548 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC6.3□□□□□ -1.4
MSX2P35548 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
MSX2P35548 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
MSX2P35548 ZNF880-202ENST00000422689 2230 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
MSX2P35548 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
MSX2P35548 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
MSX2P35548 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
MSX2P35548 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
MSX2P35548 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
MSX2P35548 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
MSX2P35548 RNA5SP188-201ENST00000362916 129 ntBASIC6.3□□□□□ -1.4
MSX2P35548 RN7SKP55-201ENST00000364888 307 ntBASIC6.3□□□□□ -1.4
MSX2P35548 AL353625.1-202ENST00000366273 571 ntBASIC6.3□□□□□ -1.4
MSX2P35548 HHLA3-203ENST00000370940 775 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
MSX2P35548 SERPINB12-202ENST00000382768 1278 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
MSX2P35548 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
MSX2P35548 AC090114.1-201ENST00000393266 448 ntBASIC6.3□□□□□ -1.4
MSX2P35548 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC6.3□□□□□ -1.4
MSX2P35548 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC6.3□□□□□ -1.4
MSX2P35548 ZBTB8OSP2-201ENST00000423890 504 ntBASIC6.3□□□□□ -1.4
MSX2P35548 DNAJA1P1-201ENST00000425106 1187 ntBASIC6.3□□□□□ -1.4
MSX2P35548 RNF19BPX-201ENST00000426224 625 ntBASIC6.3□□□□□ -1.4
MSX2P35548 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC6.3□□□□□ -1.4
MSX2P35548 PTP4A1P3-201ENST00000433661 420 ntBASIC6.3□□□□□ -1.4
MSX2P35548 PHBP4-201ENST00000437447 837 ntBASIC6.3□□□□□ -1.4
MSX2P35548 AC073648.4-201ENST00000442655 781 ntBASIC6.3□□□□□ -1.4
MSX2P35548 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC6.3□□□□□ -1.4
MSX2P35548 AC009970.1-201ENST00000444873 432 ntTSL 3 BASIC6.3□□□□□ -1.4
MSX2P35548 HIST1H2APS6-201ENST00000448609 364 ntBASIC6.3□□□□□ -1.4
MSX2P35548 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC6.3□□□□□ -1.4
MSX2P35548 HMGB1P26-201ENST00000452520 628 ntBASIC6.3□□□□□ -1.4
MSX2P35548 RPSAP24-201ENST00000461543 873 ntBASIC6.3□□□□□ -1.4
MSX2P35548 AC020779.1-201ENST00000478757 796 ntBASIC6.3□□□□□ -1.4
MSX2P35548 TAAR3P-202ENST00000481759 1025 ntBASIC6.3□□□□□ -1.4
MSX2P35548 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC6.3□□□□□ -1.4
MSX2P35548 RN7SL445P-201ENST00000495609 293 ntBASIC6.3□□□□□ -1.4
MSX2P35548 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC6.3□□□□□ -1.4
MSX2P35548 C8orf44-205ENST00000521889 598 ntAPPRIS ALT2 TSL 3 BASIC6.3□□□□□ -1.4
MSX2P35548 TBCA-209ENST00000522370 435 ntTSL 3 BASIC6.3□□□□□ -1.4
MSX2P35548 AC138123.2-204ENST00000547432 721 ntTSL 3 BASIC6.3□□□□□ -1.4
MSX2P35548 ATP5G2-205ENST00000549748 728 ntTSL 2 BASIC6.3□□□□□ -1.4
MSX2P35548 AC011603.2-202ENST00000552893 504 ntTSL 3 BASIC6.3□□□□□ -1.4
MSX2P35548 AC091178.1-204ENST00000577328 366 ntTSL 4 BASIC6.3□□□□□ -1.4
MSX2P35548 MIR4786-201ENST00000583954 80 ntBASIC6.3□□□□□ -1.4
MSX2P35548 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC6.3□□□□□ -1.4
MSX2P35548 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
MSX2P35548 AC025588.2-201ENST00000604851 466 ntBASIC6.3□□□□□ -1.4
MSX2P35548 AC092902.3-201ENST00000610060 373 ntTSL 3 BASIC6.3□□□□□ -1.4
MSX2P35548 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC6.3□□□□□ -1.4
MSX2P35548 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC6.3□□□□□ -1.4
MSX2P35548 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC6.3□□□□□ -1.4
MSX2P35548 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC6.3□□□□□ -1.4
MSX2P35548 AC068792.1-201ENST00000621354 417 ntBASIC6.3□□□□□ -1.4
MSX2P35548 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC6.3□□□□□ -1.4
MSX2P35548 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
MSX2P35548 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC6.3□□□□□ -1.4
MSX2P35548 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
MSX2P35548 AC021755.1-201ENST00000559747 1447 ntBASIC6.3□□□□□ -1.4
MSX2P35548 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
MSX2P35548 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
MSX2P35548 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
MSX2P35548 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC6.3□□□□□ -1.4
MSX2P35548 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
MSX2P35548 CYLD-210ENST00000566206 3104 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
MSX2P35548 AC090220.1-201ENST00000593078 1699 ntBASIC6.3□□□□□ -1.4
MSX2P35548 GOT2P1-201ENST00000440922 1309 ntBASIC6.29□□□□□ -1.4
MSX2P35548 LINC01205-201ENST00000489670 1331 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
MSX2P35548 MAPK10-357ENST00000641831 2858 ntBASIC6.29□□□□□ -1.4
MSX2P35548 INTS7-203ENST00000366994 4417 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSX2P35548 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
MSX2P35548 CIR1-201ENST00000342016 1921 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSX2P35548 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
MSX2P35548 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC6.29□□□□□ -1.4
MSX2P35548 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC6.29□□□□□ -1.4
MSX2P35548 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
MSX2P35548 TEX11-204ENST00000395889 3133 ntAPPRIS P3 TSL 2 BASIC6.29□□□□□ -1.4
MSX2P35548 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC6.29□□□□□ -1.4
MSX2P35548 HNRNPCL4-201ENST00000323770 882 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
MSX2P35548 Y_RNA.169-201ENST00000363745 96 ntBASIC6.29□□□□□ -1.4
MSX2P35548 OR1N2-201ENST00000373688 1103 ntAPPRIS ALT2 BASIC6.29□□□□□ -1.4
MSX2P35548 AC234772.1-201ENST00000377927 937 ntBASIC6.29□□□□□ -1.4
MSX2P35548 RNU6-468P-201ENST00000384003 109 ntBASIC6.29□□□□□ -1.4
MSX2P35548 FAUP2-201ENST00000394301 401 ntBASIC6.29□□□□□ -1.4
MSX2P35548 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
MSX2P35548 OR7E91P-201ENST00000400027 866 ntBASIC6.29□□□□□ -1.4
MSX2P35548 HMGB1P13-201ENST00000406019 642 ntBASIC6.29□□□□□ -1.4
MSX2P35548 MTERF4-205ENST00000407095 799 ntTSL 2 BASIC6.29□□□□□ -1.4
MSX2P35548 AC096644.3-201ENST00000416788 338 ntBASIC6.29□□□□□ -1.4
MSX2P35548 AL121823.1-201ENST00000418369 741 ntTSL 3 BASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms