Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC6.36□□□□□ -1.39
APOEP02649 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
APOEP02649 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC6.36□□□□□ -1.39
APOEP02649 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC6.36□□□□□ -1.39
APOEP02649 AC025262.3-201ENST00000623666 360 ntBASIC6.36□□□□□ -1.39
APOEP02649 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC6.36□□□□□ -1.39
APOEP02649 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC6.36□□□□□ -1.39
APOEP02649 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
APOEP02649 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
APOEP02649 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC6.36□□□□□ -1.39
APOEP02649 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
APOEP02649 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
APOEP02649 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
APOEP02649 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
APOEP02649 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
APOEP02649 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
APOEP02649 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC6.36□□□□□ -1.39
APOEP02649 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
APOEP02649 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
APOEP02649 AL731532.1-201ENST00000623972 4236 ntBASIC6.36□□□□□ -1.39
APOEP02649 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC6.35□□□□□ -1.39
APOEP02649 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
APOEP02649 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
APOEP02649 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
APOEP02649 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
APOEP02649 RNA5SP375-201ENST00000362975 119 ntBASIC6.35□□□□□ -1.39
APOEP02649 RNA5SP433-201ENST00000364491 114 ntBASIC6.35□□□□□ -1.39
APOEP02649 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
APOEP02649 SULT6B1-201ENST00000407963 902 ntTSL 5 BASIC6.35□□□□□ -1.39
APOEP02649 RN7SKP151-201ENST00000410230 316 ntBASIC6.35□□□□□ -1.39
APOEP02649 LINC01114-201ENST00000421071 482 ntTSL 3 BASIC6.35□□□□□ -1.39
APOEP02649 SETP9-201ENST00000423837 832 ntBASIC6.35□□□□□ -1.39
APOEP02649 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC6.35□□□□□ -1.39
APOEP02649 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC6.35□□□□□ -1.39
APOEP02649 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC6.35□□□□□ -1.39
APOEP02649 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC6.35□□□□□ -1.39
APOEP02649 RAB28P2-201ENST00000454299 641 ntBASIC6.35□□□□□ -1.39
APOEP02649 SETP4-201ENST00000455717 868 ntBASIC6.35□□□□□ -1.39
APOEP02649 AC112187.1-201ENST00000455837 479 ntBASIC6.35□□□□□ -1.39
APOEP02649 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC6.35□□□□□ -1.39
APOEP02649 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
APOEP02649 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC6.35□□□□□ -1.39
APOEP02649 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC6.35□□□□□ -1.39
APOEP02649 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC6.35□□□□□ -1.39
APOEP02649 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC6.35□□□□□ -1.39
APOEP02649 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC6.35□□□□□ -1.39
APOEP02649 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC6.35□□□□□ -1.39
APOEP02649 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC6.35□□□□□ -1.39
APOEP02649 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC6.35□□□□□ -1.39
APOEP02649 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC6.35□□□□□ -1.39
APOEP02649 AC020916.2-201ENST00000591242 360 ntBASIC6.35□□□□□ -1.39
APOEP02649 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
APOEP02649 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
APOEP02649 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
APOEP02649 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
APOEP02649 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC6.35□□□□□ -1.39
APOEP02649 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
APOEP02649 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
APOEP02649 AC004656.1-201ENST00000568479 4951 ntBASIC6.35□□□□□ -1.39
APOEP02649 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
APOEP02649 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC6.35□□□□□ -1.39
APOEP02649 AL137141.1-201ENST00000624622 4836 ntBASIC6.34□□□□□ -1.39
APOEP02649 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC6.34□□□□□ -1.39
APOEP02649 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC6.34□□□□□ -1.39
APOEP02649 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
APOEP02649 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC6.34□□□□□ -1.39
APOEP02649 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
APOEP02649 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC6.34□□□□□ -1.39
APOEP02649 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC6.34□□□□□ -1.39
APOEP02649 RPL23AP17-201ENST00000401064 499 ntBASIC6.34□□□□□ -1.39
APOEP02649 AL121835.1-201ENST00000404250 354 ntBASIC6.34□□□□□ -1.39
APOEP02649 RPS26P38-201ENST00000414476 348 ntBASIC6.34□□□□□ -1.39
APOEP02649 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
APOEP02649 AC015977.1-201ENST00000418887 292 ntBASIC6.34□□□□□ -1.39
APOEP02649 AC245884.2-201ENST00000426257 404 ntBASIC6.34□□□□□ -1.39
APOEP02649 RPL34P27-201ENST00000428810 349 ntBASIC6.34□□□□□ -1.39
APOEP02649 TRIM60P16-201ENST00000444048 694 ntBASIC6.34□□□□□ -1.39
APOEP02649 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC6.34□□□□□ -1.39
APOEP02649 FTLP8-201ENST00000446770 267 ntBASIC6.34□□□□□ -1.39
APOEP02649 Z83838.1-202ENST00000456225 839 ntBASIC6.34□□□□□ -1.39
APOEP02649 AL445687.2-201ENST00000458156 728 ntBASIC6.34□□□□□ -1.39
APOEP02649 AL035690.1-201ENST00000490892 383 ntBASIC6.34□□□□□ -1.39
APOEP02649 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC6.34□□□□□ -1.39
APOEP02649 RBBP4P1-201ENST00000502424 1276 ntBASIC6.34□□□□□ -1.39
APOEP02649 AL158068.1-201ENST00000506116 616 ntBASIC6.34□□□□□ -1.39
APOEP02649 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC6.34□□□□□ -1.39
APOEP02649 OR5D2P-201ENST00000524390 911 ntBASIC6.34□□□□□ -1.39
APOEP02649 FAU-203ENST00000525297 355 ntTSL 5 BASIC6.34□□□□□ -1.39
APOEP02649 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC6.34□□□□□ -1.39
APOEP02649 AC023906.3-201ENST00000559825 874 ntTSL 5 BASIC6.34□□□□□ -1.39
APOEP02649 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC6.34□□□□□ -1.39
APOEP02649 RNU4ATAC-201ENST00000580972 127 ntBASIC6.34□□□□□ -1.39
APOEP02649 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC6.34□□□□□ -1.39
APOEP02649 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC6.34□□□□□ -1.39
APOEP02649 AL645933.2-201ENST00000606743 1207 ntBASIC6.34□□□□□ -1.39
APOEP02649 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC6.34□□□□□ -1.39
APOEP02649 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
APOEP02649 RN7SL261P-201ENST00000613441 282 ntBASIC6.34□□□□□ -1.39
APOEP02649 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC6.34□□□□□ -1.39
APOEP02649 AC119674.1-217ENST00000641942 1086 ntBASIC6.34□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms