Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SSX4O60224 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SSX4O60224 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
SSX4O60224 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SSX4O60224 AC092451.3-201ENST00000625067 1343 ntBASIC5.68□□□□□ -1.5
SSX4O60224 SMG1P5-202ENST00000529428 4219 ntBASIC5.68□□□□□ -1.5
SSX4O60224 SMG1P2-201ENST00000566127 4221 ntBASIC5.68□□□□□ -1.5
SSX4O60224 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
SSX4O60224 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.68□□□□□ -1.5
SSX4O60224 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
SSX4O60224 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.68□□□□□ -1.5
SSX4O60224 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SSX4O60224 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
SSX4O60224 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.67□□□□□ -1.5
SSX4O60224 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SSX4O60224 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
SSX4O60224 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SSX4O60224 AC062022.1-201ENST00000451026 1684 ntBASIC5.67□□□□□ -1.5
SSX4O60224 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.67□□□□□ -1.5
SSX4O60224 DAPL1-201ENST00000309950 552 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SSX4O60224 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SSX4O60224 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SSX4O60224 RNU6-670P-201ENST00000364312 104 ntBASIC5.67□□□□□ -1.5
SSX4O60224 RNA5SP279-201ENST00000365513 117 ntBASIC5.67□□□□□ -1.5
SSX4O60224 U3.52-201ENST00000384034 216 ntBASIC5.67□□□□□ -1.5
SSX4O60224 AL023284.3-201ENST00000407767 334 ntBASIC5.67□□□□□ -1.5
SSX4O60224 MIR1282-201ENST00000408865 101 ntBASIC5.67□□□□□ -1.5
SSX4O60224 DAPL1-203ENST00000409042 544 ntTSL 4 BASIC5.67□□□□□ -1.5
SSX4O60224 HNRNPA1P18-201ENST00000433537 927 ntBASIC5.67□□□□□ -1.5
SSX4O60224 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC5.67□□□□□ -1.5
SSX4O60224 NFIA-AS2-203ENST00000438559 1275 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SSX4O60224 COL11A2P1-205ENST00000441798 676 ntBASIC5.67□□□□□ -1.5
SSX4O60224 MGAT2P1-201ENST00000449718 797 ntBASIC5.67□□□□□ -1.5
SSX4O60224 RPL31P53-201ENST00000457065 348 ntBASIC5.67□□□□□ -1.5
SSX4O60224 PFN1P8-201ENST00000497012 543 ntBASIC5.67□□□□□ -1.5
SSX4O60224 AC021146.11-201ENST00000503319 491 ntBASIC5.67□□□□□ -1.5
SSX4O60224 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC5.67□□□□□ -1.5
SSX4O60224 AC020980.1-201ENST00000513041 458 ntTSL 5 BASIC5.67□□□□□ -1.5
SSX4O60224 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC5.67□□□□□ -1.5
SSX4O60224 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC5.67□□□□□ -1.5
SSX4O60224 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC5.67□□□□□ -1.5
SSX4O60224 OLR1-209ENST00000543993 822 ntTSL 2 BASIC5.67□□□□□ -1.5
SSX4O60224 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC5.67□□□□□ -1.5
SSX4O60224 MIR4310-201ENST00000582950 57 ntBASIC5.67□□□□□ -1.5
SSX4O60224 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC5.67□□□□□ -1.5
SSX4O60224 AP001357.1-201ENST00000586304 1053 ntBASIC5.67□□□□□ -1.5
SSX4O60224 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SSX4O60224 AP001267.4-201ENST00000602598 545 ntBASIC5.67□□□□□ -1.5
SSX4O60224 AL499605.1-201ENST00000604628 403 ntBASIC5.67□□□□□ -1.5
SSX4O60224 AL589743.6-201ENST00000611025 117 ntBASIC5.67□□□□□ -1.5
SSX4O60224 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC5.67□□□□□ -1.5
SSX4O60224 MIR6861-201ENST00000618657 64 ntBASIC5.67□□□□□ -1.5
SSX4O60224 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC5.67□□□□□ -1.5
SSX4O60224 RNASE11-211ENST00000620912 883 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
SSX4O60224 AL122023.1-201ENST00000622847 530 ntBASIC5.67□□□□□ -1.5
SSX4O60224 AC114546.4-201ENST00000624413 369 ntBASIC5.67□□□□□ -1.5
SSX4O60224 AP001052.1-201ENST00000626421 99 ntBASIC5.67□□□□□ -1.5
SSX4O60224 SNORA16A-202ENST00000628458 135 ntBASIC5.67□□□□□ -1.5
SSX4O60224 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC5.67□□□□□ -1.5
SSX4O60224 AC010325.3-201ENST00000641084 394 ntBASIC5.67□□□□□ -1.5
SSX4O60224 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.67□□□□□ -1.5
SSX4O60224 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SSX4O60224 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SSX4O60224 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
SSX4O60224 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SSX4O60224 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC5.67□□□□□ -1.5
SSX4O60224 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.67□□□□□ -1.5
SSX4O60224 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.67□□□□□ -1.5
SSX4O60224 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SSX4O60224 AL121768.1-201ENST00000613917 2544 ntBASIC5.67□□□□□ -1.5
SSX4O60224 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC5.66□□□□□ -1.5
SSX4O60224 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC5.66□□□□□ -1.5
SSX4O60224 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
SSX4O60224 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.66□□□□□ -1.5
SSX4O60224 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
SSX4O60224 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SSX4O60224 SHQ1P1-201ENST00000437111 1544 ntBASIC5.66□□□□□ -1.5
SSX4O60224 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
SSX4O60224 TAS2R42-201ENST00000334266 945 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
SSX4O60224 OR4F5-201ENST00000335137 1054 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
SSX4O60224 SNORD35A-201ENST00000363389 86 ntBASIC5.66□□□□□ -1.5
SSX4O60224 SNORA38B-201ENST00000363524 131 ntBASIC5.66□□□□□ -1.5
SSX4O60224 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.66□□□□□ -1.5
SSX4O60224 MT-RNR1-201ENST00000389680 954 ntBASIC5.66□□□□□ -1.5
SSX4O60224 AL391419.1-201ENST00000398901 1275 ntBASIC5.66□□□□□ -1.5
SSX4O60224 AL139039.2-201ENST00000407436 479 ntBASIC5.66□□□□□ -1.5
SSX4O60224 AL360013.1-201ENST00000419031 858 ntBASIC5.66□□□□□ -1.5
SSX4O60224 KIF4CP-201ENST00000422742 1279 ntBASIC5.66□□□□□ -1.5
SSX4O60224 FTO-202ENST00000431610 707 ntTSL 3 BASIC5.66□□□□□ -1.5
SSX4O60224 AC114878.1-201ENST00000441166 358 ntBASIC5.66□□□□□ -1.5
SSX4O60224 UBBP5-201ENST00000446970 266 ntBASIC5.66□□□□□ -1.5
SSX4O60224 RN7SL39P-201ENST00000462264 297 ntBASIC5.66□□□□□ -1.5
SSX4O60224 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC5.66□□□□□ -1.5
SSX4O60224 RPL23AP64-201ENST00000469465 435 ntBASIC5.66□□□□□ -1.5
SSX4O60224 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC5.66□□□□□ -1.5
SSX4O60224 AC093870.1-201ENST00000506837 213 ntBASIC5.66□□□□□ -1.5
SSX4O60224 IGHV1-14-201ENST00000523391 241 ntBASIC5.66□□□□□ -1.5
SSX4O60224 BMPR1APS2-201ENST00000527904 1012 ntBASIC5.66□□□□□ -1.5
SSX4O60224 AC108136.1-201ENST00000530350 631 ntTSL 5 BASIC5.66□□□□□ -1.5
SSX4O60224 TOMM20P1-201ENST00000534518 427 ntBASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms