Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 AC080011.1-201ENST00000552378 989 ntTSL 3 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 MIR4420-201ENST00000583944 77 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
NKX3-1Q99801 AC097467.3-216ENST00000599555 1293 ntTSL 5 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 BX322635.1-201ENST00000605804 496 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 AC005828.7-201ENST00000607331 556 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 U1.25-201ENST00000614085 162 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 U1.34-201ENST00000618578 162 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 U1.31-201ENST00000620022 160 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 AC069234.4-201ENST00000621276 412 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 OR7E91P-202ENST00000642062 1198 ntBASIC5.35□□□□□ -1.55
NKX3-1Q99801 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
NKX3-1Q99801 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
NKX3-1Q99801 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
NKX3-1Q99801 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
NKX3-1Q99801 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 NSF-206ENST00000575068 2667 ntTSL 2 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
NKX3-1Q99801 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
NKX3-1Q99801 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
NKX3-1Q99801 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
NKX3-1Q99801 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
NKX3-1Q99801 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.34□□□□□ -1.55
NKX3-1Q99801 AC011933.2-201ENST00000578539 2790 ntBASIC5.34□□□□□ -1.55
NKX3-1Q99801 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
NKX3-1Q99801 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC5.34□□□□□ -1.55
NKX3-1Q99801 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
NKX3-1Q99801 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
NKX3-1Q99801 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
NKX3-1Q99801 SNORA43.1-201ENST00000364863 140 ntBASIC5.34□□□□□ -1.55
NKX3-1Q99801 NPM1P38-201ENST00000403835 865 ntBASIC5.34□□□□□ -1.55
NKX3-1Q99801 DHFRP5-201ENST00000406944 564 ntBASIC5.34□□□□□ -1.55
NKX3-1Q99801 ZNF92P1Y-201ENST00000415010 1191 ntBASIC5.34□□□□□ -1.55
NKX3-1Q99801 AC013268.2-201ENST00000420753 337 ntBASIC5.34□□□□□ -1.55
NKX3-1Q99801 OR5W1P-201ENST00000423705 938 ntBASIC5.34□□□□□ -1.55
NKX3-1Q99801 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC5.34□□□□□ -1.55
NKX3-1Q99801 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC5.34□□□□□ -1.55
NKX3-1Q99801 AC245884.2-201ENST00000426257 404 ntBASIC5.34□□□□□ -1.55
NKX3-1Q99801 AC016027.5-201ENST00000427227 210 ntBASIC5.34□□□□□ -1.55
NKX3-1Q99801 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC5.34□□□□□ -1.55
NKX3-1Q99801 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
NKX3-1Q99801 NDUFA5P8-201ENST00000449019 346 ntBASIC5.34□□□□□ -1.55
NKX3-1Q99801 AC019084.1-201ENST00000457337 432 ntBASIC5.34□□□□□ -1.55
NKX3-1Q99801 AC005165.2-201ENST00000466070 380 ntBASIC5.34□□□□□ -1.55
NKX3-1Q99801 AL035690.1-201ENST00000490892 383 ntBASIC5.34□□□□□ -1.55
NKX3-1Q99801 RNA5SP206-201ENST00000516703 121 ntBASIC5.34□□□□□ -1.55
NKX3-1Q99801 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC5.34□□□□□ -1.55
NKX3-1Q99801 GTF2IP11-201ENST00000526931 420 ntBASIC5.34□□□□□ -1.55
NKX3-1Q99801 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC5.34□□□□□ -1.55
NKX3-1Q99801 AC007207.2-201ENST00000543206 542 ntTSL 3 BASIC5.34□□□□□ -1.55
NKX3-1Q99801 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
NKX3-1Q99801 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
NKX3-1Q99801 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC5.34□□□□□ -1.55
NKX3-1Q99801 AC092067.1-201ENST00000592929 488 ntTSL 3 BASIC5.34□□□□□ -1.55
NKX3-1Q99801 NDUFB9P1-201ENST00000604683 510 ntBASIC5.34□□□□□ -1.55
NKX3-1Q99801 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC5.34□□□□□ -1.55
NKX3-1Q99801 PCGEM1-202ENST00000606314 759 ntTSL 5 BASIC5.34□□□□□ -1.55
NKX3-1Q99801 LIPF-205ENST00000608620 1290 ntTSL 2 BASIC5.34□□□□□ -1.55
NKX3-1Q99801 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
NKX3-1Q99801 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC5.34□□□□□ -1.55
NKX3-1Q99801 OR8A1-204ENST00000642111 1145 ntBASIC5.34□□□□□ -1.55
NKX3-1Q99801 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
NKX3-1Q99801 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.34□□□□□ -1.55
NKX3-1Q99801 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
NKX3-1Q99801 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC5.34□□□□□ -1.55
NKX3-1Q99801 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC5.34□□□□□ -1.55
NKX3-1Q99801 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC5.34□□□□□ -1.55
NKX3-1Q99801 AL136984.1-201ENST00000607611 1893 ntBASIC5.34□□□□□ -1.55
NKX3-1Q99801 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.56
NKX3-1Q99801 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.34□□□□□ -1.56
NKX3-1Q99801 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.56
NKX3-1Q99801 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
NKX3-1Q99801 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
NKX3-1Q99801 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
NKX3-1Q99801 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
NKX3-1Q99801 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
NKX3-1Q99801 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
NKX3-1Q99801 CCNT2P1-201ENST00000423082 1315 ntBASIC5.33□□□□□ -1.56
NKX3-1Q99801 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
NKX3-1Q99801 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
NKX3-1Q99801 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
NKX3-1Q99801 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
NKX3-1Q99801 RNA5SP375-201ENST00000362975 119 ntBASIC5.33□□□□□ -1.56
NKX3-1Q99801 GNG5P2-201ENST00000372054 207 ntBASIC5.33□□□□□ -1.56
NKX3-1Q99801 AL121835.1-201ENST00000404250 354 ntBASIC5.33□□□□□ -1.56
NKX3-1Q99801 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms